Qipengyuania spongiae: L1F33_11545
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Entry
L1F33_11545 CDS
T08950
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
qsp
Qipengyuania spongiae
Pathway
qsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1F33_11545 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsp03019
]
L1F33_11545 (rnr)
03016 Transfer RNA biogenesis [BR:
qsp03016
]
L1F33_11545 (rnr)
Enzymes [BR:
qsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L1F33_11545 (rnr)
Messenger RNA biogenesis [BR:
qsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L1F33_11545 (rnr)
Transfer RNA biogenesis [BR:
qsp03016
]
Prokaryotic type
tRNA degradation factors
L1F33_11545 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
UVI38869
LinkDB
All DBs
Position
2322247..2324595
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AA seq
782 aa
AA seq
DB search
MQDKKTKPKRPSKKTFQGLPSKEQILEFIQTADGPAGKREIGKAFGLKGQEKIALKKRLK
DMAEEGLIDGKRTAYHRMGGVPKVTVLKVVAIEDGEVYAEPENWAPDAGEKPPRLLVMES
KKMAALKRGDRFLARNEETERGWRATPMKKLPARTEGLMGVVEFDGSGKPWLAPVDKRVR
NSSPISDVGEAKEGELVLAERSGKSPRSGVKVIEVIGDPLAPKAFSLIAIAKHGIPHIFP
DEALAEARRAAELPLSEDDREDLRDVPIVAIDPADARDHDDAIWAEPDGKGGYKAIVAIA
DVSFYVRPGGALDREARKRGNSVYFPDRVVPMLPEILSADVCSLVEGADRAAMACHMTIS
SEGKITDWRFTRATVRLASNVAYEDAQARIDDGTAPDHLKHLWGAWKLLHAAREARDPLD
LDLPERQVRLNDDGVIEEIAVRERLDAHRVVEDFMIAANVAAAKALEAKKAPVVYRVHET
PSREKLLAFKEYLASQGRNFAMGQVITPGLFNRLIKDVSDPAEKALIMEAVLRSQTQAYY
GPANAGHFGLALGSYAHFTSPIRRYADLLVHRALVDAYKLEQPKSKLDLPEGTGLSDRDR
STLGNITDAISQTERRAMEAERDTIDRYVAAWLSGRVGETFDTRITGVQGFGFFATIDKL
GGDGLVPVSTLGREYFHYDEAAQKLVGEKSGTEYAVGDRLKLKLAEANALTGALKFEVPD
SDGAPIEKRGERTSPRKRTHQKGSGKGPAKGVKKGNGAPRQKHEQNKRGRPGNIRHQGRK
KK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacaagaaaacaaagccgaagcggccctcgaaaaaaacgtttcagggcctgcct
tcgaaggaacagatactcgaattcatccagaccgccgatggccccgcgggcaagcgggag
atcggcaaggcgttcggcctcaagggccaggaaaagatcgcgctgaaaaagcgcctcaag
gacatggccgaggaaggcctgatagacggcaagcgcaccgcctaccaccggatgggcggg
gtgcccaaggtaaccgtgctcaaggtcgtcgcgatcgaggatggcgaggtctatgccgag
cccgagaactgggcgccggatgcgggcgagaaaccaccccgcctgctggtgatggaatcg
aagaagatggcggcgctgaagcgcggcgaccgcttcctcgcccgcaacgaggagaccgag
cggggctggcgcgcgacaccgatgaagaagctgcccgcccggaccgaggggctgatgggc
gtcgtcgagttcgacggcagtggcaagccttggctcgccccggtcgacaagcgggtgcgc
aattcctcgcccatctccgatgtcggcgaggcgaaggaaggcgaactcgtcctcgccgaa
cgcagcggcaagtcgccgcgctccggcgtgaaggtcatcgaggtgatcggcgatccgctg
gcgcccaaggctttcagcctgatcgccatcgccaagcacggcatcccgcacatcttcccc
gacgaagccctcgccgaagcccgccgcgccgccgaactgcccctgagcgaggacgaccgc
gaggatctgcgcgatgttcccatcgtcgccatcgacccggcggacgcccgcgaccacgac
gatgcgatctgggccgagcccgacgggaagggcggctacaaggcaatcgtcgccatcgcc
gatgtcagtttctacgtccgccccggcggcgcactcgaccgcgaggcgaggaagcgcggc
aactccgtctatttccccgaccgtgtcgtgccgatgctgcccgaaatcctgagcgccgat
gtctgctcactggtcgaaggggcggatcgcgccgcaatggcgtgccacatgacgatctcg
tccgagggcaagatcaccgactggcgcttcacccgcgcaaccgtgcggctcgcctcgaac
gtggcctatgaggacgcgcaggcccggatcgacgacgggaccgcgcccgatcacctcaag
catctctggggtgcgtggaagctgctccacgccgcgcgggaggcgcgcgatccgcttgat
ctcgacctgcccgagcggcaggtgcgcctcaacgacgatggcgtgatcgaggaaatcgcc
gtgcgcgagcggctcgacgcgcatcgcgtggtcgaggatttcatgatcgccgccaatgtc
gccgcggccaaggcgctcgaggcgaagaaggcgcccgtcgtctatcgcgtccacgagacg
ccaagccgcgagaagctgctggctttcaaggaatatctcgccagccagggtcgcaacttc
gccatgggccaggtcatcacgccgggcctgttcaaccgcctgatcaaggatgtctccgac
ccggccgagaaggcgctgatcatggaagcggtgctgcgcagccagacgcaggcctattac
ggccccgccaatgcggggcatttcggcctggcgcttggcagctacgcgcatttcacctcg
cccatccgccgctatgccgacctgctggtgcatcgcgcgctggtcgatgcctacaagctc
gaacagccgaaatcgaagctcgacctgcccgaaggaacgggcctctccgaccgcgaccgc
tcgacgctcggcaacatcaccgacgcgatcagccagaccgaacgccgcgcgatggaagcg
gagcgggacacgatcgaccgctacgtcgccgcctggctgtcgggccgcgtcggcgagacc
ttcgacacccggatcaccggcgtgcagggcttcggcttcttcgccacgatcgacaagctg
ggcggcgacggtctcgtgccggtcagcacgctcggccgcgaatatttccattacgacgag
gcggcgcagaaactcgtaggcgaaaagagcggcaccgagtacgccgtgggcgaccgactg
aagctgaagcttgccgaagccaacgcccttaccggcgcgctcaagttcgaggtgcccgac
agcgacggtgctccgatcgagaagcgcggcgagcggacttcgccgcgcaagcgcacccat
cagaagggctcgggcaaaggacctgcgaagggcgtcaagaaaggcaacggcgcgccgcgg
cagaaacacgaacagaacaagcgcggccgccccggcaacatccgccatcaggggcgcaag
aagaagtga
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