Quercus suber (cork oak): 111995783
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Entry
111995783 CDS
T05868
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111995783
09123 Folding, sorting and degradation
03018 RNA degradation
111995783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
111995783
03041 Spliceosome [BR:
qsu03041
]
111995783
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111995783
mRNA cycle factors
Stress granule specific factors
111995783
Spliceosome [BR:
qsu03041
]
Complex C
Other components
Complex C specific factors
111995783
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_3
RRM_7
Nup35_RRM
SET_assoc
MARF1_RRM1
DUF5062
HPS3_C
Motif
Other DBs
NCBI-GeneID:
111995783
NCBI-ProteinID:
XP_023883484
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MAQVQVQVQAQAPPPQPQAQVVNGVAVANGSGQFVSTSLYVGDLDQNVTDSQLYDFFNQM
GQVVSVRVCRDLSTRRSLGYGYVNYSNTQDAARALDTLNFTPLNGKPIRIMYSYRDPSIR
KSGAGNIFIKNLDRAIDNKALHETFSSFGNILSCKIATDQSGQSKGYGFVQFDNEESAKS
AIEKLNGMLLNDKQVFVGPFLRKQERDSGTDKIKFNNVYVKNLSESTTEGDLQKTFGEYG
TITSVVVMRDGDGKSKCFGFVNFENPDDAALAVDALNGKKDEDKEWYVGKAQKKSERENE
LKGRIEQNLREKVDKYEGLNLYVKNLDDSITDDKLRELFLEYGTVTSCKVMCDPNGISRG
SGFVAFSTAEEASRALQEMNGKMIVSKPLYVALAQRKEDRRAKLQAQFQQLRPSAIATPV
APRMPLYPPGAPGLGQQLFYGQGPPAILPPQPGFGYQQQLVPGMRPNFFVPMVQPGPQGQ
RPGGRRSGGGVGQQNQQPLSLMQPQMVPRGRAYRYPPGRNMPDVPITGVPGGMLSVPYDM
GGMTFRDGSFSQPMATGALATALANAPPEQQRTLLGENLYPLVDQLEHENAAKVTGMLLE
MDQTEVLHLLESPEALKAKVSEAMDVLRNVNQQQQVNSPTDRMASLSLNDNLVS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttcaggttcaagttcaggctcaggctcctccgcctcagccacaggctcag
gtggtgaatggagtggcggtggccaatgggtcgggccagttcgtgtcgacgtcgttgtac
gttggagatcttgaccagaatgtgacggactcgcagctctacgacttctttaaccagatg
ggtcaggtcgtgtcggttcgagtctgtagggacctcagcactcgccgctcgctcggctat
ggttatgtcaattatagcaacacccaagatgcggcacgtgcgttggatactttgaatttt
actcctctcaatggcaagccaattaggattatgtattcttatcgtgaccctagtatccgt
aaaagtggggcagggaatatatttattaagaatttggacagggccattgacaacaaggca
ctacatgagacattttcatcatttgggaatatcttgtcttgcaagatagctactgatcag
tcaggtcaatcaaaaggatacggttttgtgcaattcgataatgaggagtctgccaaaagt
gctattgaaaagctgaatggcatgctattgaatgacaaacaagtatttgttggacccttt
ctccgtaagcaagaaagagattctgggacagataagatcaaattcaacaatgtctatgtc
aagaatctgtcagaatcaaccactgaaggagatctgcagaaaacttttggtgaatatgga
actattaccagtgttgtagttatgagagatggagatggaaaatctaaatgttttggattt
gtcaactttgagaacccagatgatgcagctcttgctgtcgatgctctcaatggaaagaag
gatgaagataaggagtggtatgtaggaaaagcacagaaaaaatctgaaagagagaatgaa
ctgaaaggacgaattgagcaaaatttgagggagaaggttgacaaatatgaggggctgaat
ttatatgttaaaaacctagatgatagcatcactgatgataagctcagggaattgttctta
gaatatggtacagttacttcgtgcaaggtcatgtgtgaccctaatggtataagtagagga
tcaggatttgttgccttttcaactgctgaagaagcatctcgagctcttcaggagatgaat
ggtaaaatgattgtcagcaaaccattatatgtcgcacttgcacaacgtaaagaagataga
agagcaaagttgcaggcacagtttcaacaactgcgtccttctgcaatcgcaactcctgtt
gcccctcggatgcccttgtatcccccaggtgccccaggtcttggacagcaactattctat
gggcagggccctcctgctattctccctccacagcctggttttgggtatcagcagcaatta
gttcctgggatgaggccaaacttttttgtgccaatggtccaaccaggtccacagggccag
cgtcctggaggcagacgatccggaggaggggtggggcaacaaaaccagcaaccactctca
ctgatgcagccacagatggttcctaggggacgtgcctatcgttaccctcctggtcgtaac
atgcctgatgttcctattactggtgttcctgggggaatgctctctgttccttatgacatg
ggtggaatgacatttagagatggttcattttcacaacctatggcaactggggctttggct
actgcgcttgctaatgctccacctgagcagcagaggacattgttgggtgaaaatttatac
ccacttgtagaccagctggagcatgaaaatgctgcaaaagtaacaggcatgcttctggaa
atggaccagactgaggtcctgcatttgctagaatcaccagaggctttgaaagcaaaggtc
tcagaggctatggatgttctgaggaatgtcaatcagcagcaacaggtcaatagtccgact
gatcggatggcctcactctcgctgaatgataaccttgtttcttga
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integrated database retrieval system
