Quercus suber (cork oak): 111996728
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Entry
111996728 CDS
T05868
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03082
ATP-dependent chromatin remodeling
qsu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111996728
03083 Polycomb repressive complex
111996728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
qsu03036
]
111996728
Enzymes [BR:
qsu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
111996728
Chromosome and associated proteins [BR:
qsu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
111996728
HDAC complexes
Sin3A-HDAC complex
111996728
BRAF-HDAC complex
111996728
REST complex
111996728
SHIP complex
111996728
MiDAC complex
111996728
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
111996728
Heterochromatin formation proteins
Other heterochromatin formation proteins
111996728
Chromatin remodeling factors
NuRD complex
111996728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
111996728
NCBI-ProteinID:
XP_023884496
LinkDB
All DBs
Position
Unknown
AA seq
487 aa
AA seq
DB search
MRSKDKIAYYYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFSNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHQARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKETGEREGKYYAINVPLKDGIDDTSFTRLFKS
IISKVVETYVPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNEIPENEYIKYFGPEYSLRIPNGHIVCTFSEILCYQCI
LLHPYTNLIAESVISKWAHTMYSLSLVSLFFWCVSPLFSLFVEQENLNSKSYLSTIKMQV
FENLRCIQHAPGVQMQEVPPDFYIPDFDEDEQNPDERMDQHTQDKNIQRDDEYYEGDHDN
DQNMEDV
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccaaggacaagatcgcctactactacgacggggatgtgggtggtgtttacttt
gggccgaaccatccgatgaagccgcaccggctttgtatgacacatcatcttgtactctcc
tatgatcttcacaagaagatggaaatttatcgacctcacaaggcgtatcctgttgagctt
gcacagttccattcggctgattatgttgaatttttgcaccggattacacccgacactcaa
cacttgttctcaaatgaattggctaaatataatctcggagaagattgccctgtctttgaa
aacttgtttgagttttgtcaaatatatgctggtggaacgatagatgctgcacgcagattg
aacaatcaactttgtgacattgccataaattgggccggtgggttacatcatgccaagaag
tgcgaggcatctggattttgttacatcaatgacttggttttggggatcttggagcttctc
aaacatcaagcccgtgttttgtatatagatatagacgtccatcatggggatggtgtagaa
gaagccttttatttcactgacagggtgatgactgttagttttcacaagtatggagatatg
ttttttccaggaactggtgatgttaaggaaacaggagaaagagaaggcaaatattatgcc
atcaatgtcccactcaaggatggaatagatgacactagcttcacccgactttttaagagt
attatttccaaggttgttgaaacatatgttccaggtgcaatagttctccaatgtggggca
gactcgcttgctggggaccgcttgggctgcttcaatctatccattgatgggcatgctgaa
tgtgttaggtttgtgaagaagttcaatttgcccttactggtaactggaggtggaggatat
accaaagagaatgttgctcggtgttgggctgttgaaactggagttcttctggatacagag
cttcccaatgagatcccggaaaatgagtatattaaatattttggtccagaatattcattg
aggattccaaatgggcacatagtatgtactttctcagaaatcttatgttaccagtgcatt
ttacttcatccatacaccaatttgattgctgaatcagttatttccaagtgggcacatact
atgtactctctctccctagtgtctttatttttttggtgtgtttcaccccttttctcccta
tttgttgagcaggagaacttaaatagcaaatcgtacctaagcacaatcaaaatgcaagtc
ttcgaaaatcttcgttgcatccagcatgccccaggagtgcagatgcaagaggttccacct
gacttttatattcctgattttgacgaagatgagcaaaaccctgatgagcgcatggatcag
cacacccaagacaagaacatccagcgtgatgatgaatattatgaaggagaccatgataat
gatcagaacatggaagatgtatga
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