Quercus suber (cork oak): 112026514
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Entry
112026514 CDS
T05868
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112026514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112026514
Enzymes [BR:
qsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112026514
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112026514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
PTCB-BRCT
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
112026514
NCBI-ProteinID:
XP_023914972
LinkDB
All DBs
Position
Unknown
AA seq
1159 aa
AA seq
DB search
MTEQMKFSVVCSLFSWMQRSKSLGKKRSKFRKFLDTFCNPRDYFTAIRLVLPNLDRERGT
YGLKESVLATCLIDALGMSRDSQDALRLLNWRKGGAQTGANAGNFSLVAAEVLQCRQGMA
SGGLTIKDVNDLLDRLSSSENRAEKTSVLSTLINKTNAQEMKWIIMIILKDLKLGISEKS
VFHEFHPDAEDLFNVTCDLKLVCEKLRDRTQRHNRQDIEIGKAVRPQLAKRVTDTTAAWK
ELHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYGHGMSDIIVQNVLVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKTVKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH
ELLQKVVKPLKGRLEILVPNGGLDLNTHCLSGEPCWSLIAHNVDDVERFFKETIENRDEG
IVLKDLGSKWEPSDRTGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGIAE
LPAPNTYPRRFLSFSRVGTGLSDDELDAVVTKLKPYFRKYEYPQQQPPSFYQVTNNSKER
PDVWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYEKPWHECLDVQSFVEL
VHSSNGTTQRGMDYGGLQESKPKRMKTSKKGNVSIVPSHLSQTDVSDIKGGSSIFLNMMF
YFVNVPPTHSLDSFHKMVAENGGTFSMNLNNSVTHCVAADSKGIKYQAAKRHGDIINYSW
ILDCCSQKKPLHLQPKHFLFLSNSSKKLQEEIDEFSDSYYQDLDLADIKQLLSNVNRYED
TKTVDCYKKKYCPKEKWSRFHGCCVYLHPPVPSLKPDWEVLMGLALKRLKLVVSIAGGKV
SDSLVLATHLVVLSVPGFEVDFETVLNSFTSSEKHLLMNKRLHVVKYQWLEDCMERDERL
QEETYSLKTIEVEDSSTVECKHDVALGAICGLDNLDNQNISSSLDVREQRREKTSPEIPK
ILVSHEEVGKRKRGRPAGGTSNRKGKTTVAQARRTRACTGKKPAKICDNESDESGSHDEK
TCREEIKIREGNNKMSCKESSEIQETKMVQDTESSYRGKAAEEEVEKDVRYEEYNIVPNI
ELIETHRIQDSERPEKFEVMIDPVQAMLLDMFPSLGVKKIETTDTILEDEKLLLDPNTEP
TKKKKVSYKDVAGELLKDW
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgacggagcagatgaagttcagcgtagtgtgcagcctatttagttggatgcagcggagt
aagtcgttgggcaagaagcgctccaagttccgcaaattcctggacaccttctgcaatccc
cgcgattacttcacagcaatccgcctcgtgctccccaacctggaccgcgagcgcggtacc
tatggcctcaaggagtccgttctcgccacctgtctcatcgatgccctcggcatgtctcgc
gactctcaggacgccctccgccttctcaattggcgcaaaggaggcgcccaaactggtgcc
aatgccggcaatttctcgctcgttgctgcggaggttttgcagtgtagacaaggaatggcg
tctggtggactaacaattaaggatgtcaatgacttacttgatcgtttgtcttccagcgaa
aacagggccgagaagacatcagttctttctactctgataaacaagacaaatgcacaggaa
atgaagtggattattatgattattcttaaagatctaaagctggggattagtgaaaaaagc
gtttttcatgaattccatcctgatgctgaagacttgtttaatgttacctgtgacttaaaa
ttggtttgtgaaaagctgagggatagaactcaacggcataatcgacaggacattgaaatt
ggaaaagctgtgcgccctcaactagctaagagagttactgatactacggctgcatggaaa
gagctccatgggaaagaagtggttgttgagtgcaaatttgatggtgatcgcatccaaatt
cataagaatggaactgagatacatttcttctcaaggaactttcttgatcactctgaatat
ggacatgggatgtcagacattatcgtacaaaatgttttggttgatagatgtatactggat
ggtgaaatgttagtctgggatacatctttgaatcgttttgctgagtttggctcaaatcag
gaaatagccaagacagtgaaggatggactggacagtgatcgacagttgtgctatgttgcg
tttgatattctttatgtgggggataccagcgtaattcaccaaagcttgaaagaacggcat
gagcttctacagaaagttgtgaagcctttgaagggtcgtttggagatcttagtacctaat
ggtggtcttgatcttaatactcactgcctttctggggagccttgttggtcacttattgct
cataatgtggatgatgtcgagaggttcttcaaagaaaccattgagaacagagatgaaggg
attgttttaaaggaccttggttccaaatgggaacctagtgatcggactggaaagtggttg
aaattgaagcctgagtacattcgtgctggttctgatctggatgttctaatcataggagga
tactatggatctggacgccgtggtggggaggtagctcaattcttggtgggcattgcagag
cttccagcccctaatacctatcctagacgatttctttctttctccagagtgggcactgga
ctttctgatgacgagctagatgctgttgtaactaaattgaagccttattttaggaaatat
gagtacccacagcagcaaccaccaagtttttatcaagtaacgaataactcgaaagaaaga
ccggatgtttggattgacagcccggagaaatcaataattctttcaattaccagtgatatc
cgaacaataaggtctgaggtatttgccgctccttatagcctgagatttccgcgtattgac
cgagtgagatatgaaaagccttggcatgaatgcttggatgtgcaatcttttgtagaacta
gtacattcaagtaatggtactacacaaagggggatggattatggtggccttcaggaaagt
aagccaaaacgaatgaaaacctctaagaagggaaatgtctccattgttccttctcattta
agtcagactgacgtttctgacattaagggaggctcgtcaatattcttgaatatgatgttt
tactttgttaatgtcccaccaacccattctcttgattcattccacaaaatggttgctgag
aatggagggactttctcaatgaatttgaacaactcagttacccattgtgttgcagctgat
agcaaggggattaagtatcaggcggcgaaacgtcatggagatattattaattactcttgg
atattggattgttgctcccagaagaagccccttcatttacagccaaagcacttcctcttc
ctttccaattcatcaaagaagttacaagaagaaattgatgaattttctgactcttactac
caggatcttgatcttgcagacatcaaacagctcttaagtaatgtgaacagatatgaagat
acaaaaactgttgactgttataagaagaagtactgtccaaaggagaaatggtctcgtttt
catggctgctgtgtttaccttcaccctccagtaccatctttgaaaccggattgggaagtt
ctgatggggcttgcattgaagaggttgaagcttgtggtttccattgctggtggaaaagtc
agtgacagtcttgtccttgctacccatttggtagtcttgtcagtaccaggttttgaagtg
gacttcgaaactgtattaaatagcttcacttcatcagagaagcatcttttaatgaacaag
aggttgcatgttgtgaaatatcaatggttagaagactgcatggagagggatgaaagattg
caagaagaaacatatagcttgaagaccattgaggtggaagattcaagcactgtagaatgc
aaacacgatgtggctctaggagccatttgtggattggacaatttagacaatcagaatata
tcctcttctcttgatgtaagggaacagagaagggagaaaacttctccagaaattcctaaa
attttggtctcacatgaggaggttgggaaaaggaaaagaggaagacctgctggtggtaca
agcaatagaaaaggaaaaacaactgtggcacaagctcgaagaacacgagcatgtactgga
aagaagcctgctaaaatttgtgataatgaatcagatgaaagtgggtctcacgacgagaag
acttgcagggaagaaatcaaaattagagaaggaaataacaaaatgtcatgtaaggaaagt
tcagaaatccaagagactaaaatggtacaagacactgaatcatcatatagaggcaaggca
gctgaggaagaagttgaaaaagatgttagatatgaagagtacaatatagttcctaatatt
gagctgattgaaacacatagaatccaagacagtgagaggcctgaaaaattcgaagttatg
atcgatcctgttcaagccatgttgttggacatgtttccgagccttggagtgaagaaaatt
gagactacagatacaattcttgaagatgagaaactgctcttggatcccaatacagagcct
acaaagaaaaagaaagtcagctacaaggacgttgctggtgagcttctgaaggattggtaa
DBGET
integrated database retrieval system