Rahnella aquatilis HX2: Q7S_18420
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Entry
Q7S_18420 CDS
T01850
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
raa
Rahnella aquatilis HX2
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raa03019
]
Q7S_18420
Enzymes [BR:
raa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q7S_18420
Messenger RNA biogenesis [BR:
raa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q7S_18420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AFE59895
LinkDB
All DBs
Position
complement(4030348..4032792)
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AA seq
814 aa
AA seq
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MSSLPVSAVLEPLLAALQQAQQVLLLAPTGAGKSTWLPLQLLKQANLSGKILLLEPRRLA
AKNVAFRLAQQLNETPGQTVGYRMRAESKTSAATRLEVVTEGILTRMVQADPELTGVSMV
ILDEFHERSLQADLALALLLDVQNALRDDLKILIMSATLDNLRLSSLLPDAPVIESAGRS
FPVDRQYLSLATHERLDEGVARVVSRLMSENHGSMLLFLPGVAEITRVQNLLTGRLTDDV
DLCPLYGALSLEQQQKAIQPSPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERSAQFDP
RSGLTRLVTQRISQASMTQRAGRAGRLEPGLCWHLFSKEQAERASAQAEAEILQSDLSSF
WLELLQWGCQDPAQLQWLDMPPPASLSAAKNLLQRLGATDAQGKLTTAGQRMARLGCEPR
LAAMLISATAQSPDALATSALLAAMLEEPPRGGLPDMDYWFSRPQGNWQRRAKQLAQRTG
AKSGEPDASLAPWLLARAFSDRIAQRRGEDGRYLLANGLGASLPQDDGLTRAPWLVAPQL
LQGNNSPDARILLAITLDISQLPSRLPDVVKEQTAVEWDEEKGTLRAWRRWQIGRLVLKA
NPLAKPDDGELQQALIDWIRTQGLQALNWSVAAEQLRVRLLCAAKWLPEADWPSVDDQAL
LDGLERWLQPSLQGVRSLKSLQQVDLHDALLRLLDWQQRQRLDSALPTHYTVPTGSRLPI
RYHADQPPALSVRMQEMFGEQRSPQLAEGRVAVVLELLSPAQRPLQITADLAAFWQGSYR
EVQKEMKGRYPKHPWPDNPAQALPTRRTKKSSAP
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttctttgccggtcagcgccgtactcgaaccgcttttagctgcactgcaacaggct
cagcaggtgctgttgcttgcgccaaccggtgccggtaaatccacctggctgccgttgcag
ttgctgaaacaggccaacctgtcgggtaagatcctgctgcttgagccgcgccgtctggcg
gcgaaaaatgtcgctttccgtctggcgcagcaactgaatgaaacgccggggcagacagtg
gggtatcgcatgcgtgcagaaagcaaaaccagcgcggcgacccgtcttgaagtggtgacc
gaaggcattctgacccgcatggtacaggctgatcccgaactgaccggcgtgtcgatggtg
atcctcgatgaattccatgagcgcagtttgcaggccgatctggcgctggcattgttgctc
gatgtgcagaatgcgctgcgcgatgatttaaaaattctgattatgtcggccacgctcgac
aacctgcgcctgtcttctttactgccggatgcgccagtgattgaatccgcaggccgcagt
tttccggtcgacaggcagtatctttctctcgcgacacacgaacggctggatgaaggcgtg
gcgcgggtagtcagccgtctgatgagtgaaaatcacggctcgatgctgctgtttttaccc
ggagtggcggaaatcacccgtgtacagaatttgctgaccggcagactgacggacgacgtc
gatctctgcccgttgtacggtgcgctgtcgctggaacaacagcaaaaagccattcagccc
tcaccggccggacgccgcaaagtggtgctggcgacgaatattgctgaaaccagtctgacc
atcgaaggtatccgtctggtggtcgacagtggtctggagcgcagcgcgcagtttgacccg
cgcagcggcctgacgcggctggtaacacaacgtatcagccaggcgtcgatgacccaacgt
gcgggccgtgcaggtcgtctggagccgggcttgtgctggcatcttttcagcaaagagcag
gcggaacgcgccagtgctcaggcggaagccgaaattctgcaaagtgacctgagcagtttc
tggctcgagttgttgcagtggggctgtcaggatccggcgcaacttcagtggctggatatg
ccgccccccgcttcgctgtctgccgcaaaaaatcttttacagcggcttggcgcaaccgat
gcgcagggtaaactcaccactgccggacaacgcatggcccggcttggctgtgagccgcgg
ctggcggcgatgctgatttctgccacagcacaaagtcccgatgcgctggcaacgtcggcg
ctgctggcggcaatgcttgaagaaccgccacgcggcggattaccggatatggattactgg
ttcagccgtccgcagggaaactggcagcggcgggcaaaacaactggcgcagcgtaccggc
gcgaaaagcggtgagcctgatgcttcgctcgcgccgtggttactggcgcgggcgttcagc
gatcgtattgcccagcgtcgcggcgaagatggccgttatctgctggcgaacggactgggg
gcgtccttgccgcaggatgacggattaacccgcgcaccgtggctggtcgcgccgcagtta
ttacagggcaacaacagcccggatgcccgtattttgctggcgatcacgctggatatttcg
caacttccgtcgcgcctgccggatgtcgtcaaagaacaaacggcggtagaatgggatgaa
gaaaaaggcacgctgcgcgcctggcgccgctggcagatcgggcgtctggtgctgaaagcc
aatccgctggcaaagccggacgacggagagctgcaacaggcgctgatcgactggatccgc
acgcagggtttgcaggcgctgaactggtcggtcgccgcggagcaattgcgcgtgcggctt
ctttgcgccgcaaaatggttgccggaagccgactggccttcggttgacgatcaggctttg
ctcgacggtctggaacgctggttacagccttctttacagggtgttcgttcgctgaaatcg
ttgcagcaggttgatttacatgatgccttgctaaggctgcttgactggcaacagcgtcag
cgtctggacagcgcgttgccgactcattacaccgtgccgactggcagtcgtctgccaatc
cgttatcatgcagaccagccaccggcgctctcggtgagaatgcaggagatgttcggcgag
cagcgtagcccgcaactggcggaagggcgtgttgctgtggtgctggaactgctgtcaccg
gcacagaggccgttgcagatcaccgccgatctggcggcattctggcagggttcttatcgc
gaagtgcagaaagaaatgaaagggcgctatccgaaacatccgtggccggacaatccggcg
caggcattgccgacgcgccgtaccaagaagtcttcagcgccatga
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