Rhodoferax antarcticus: RA876_08235
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Entry
RA876_08235 CDS
T04655
Name
(GenBank) hypothetical protein
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
rac
Rhodoferax antarcticus
Pathway
rac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RA876_08235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rac03400
]
RA876_08235
Enzymes [BR:
rac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RA876_08235
DNA repair and recombination proteins [BR:
rac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RA876_08235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Gly-zipper_Omp
Motif
Other DBs
NCBI-ProteinID:
APW46366
LinkDB
All DBs
Position
1698314..1702132
Genome browser
AA seq
1272 aa
AA seq
DB search
MNLQATPAADPNTPRGFMVLHSNRLEDLRDLLVNYVAAHPLSPLEPEVILLQSNGMKHWL
ELALADDSALGICAATQMALPSGYLWQMYRAVLGPDAVPEHMPFDKAALLWRLVRLLPAL
CAANPVYAPLQRYLSGDNPARKLYQLAEQVADVLDAYQSYRADWLADWAQGLDQLRGPLG
APLVLPPEHAWQAQLWRDIRKDVGPARAEASRASVHERFLAALADQVNSETDSKPRLPGL
PRRLMVFGISSLPMQAVQALAALGQVCQVMLLVQNPCQYFWGDIVEGHAALRAQVRRRQQ
GKPQASEAKAMLPAAPAQPLLASWGKQGRDYLHLLDGFDEPERYRAHWSRVDVFVDPAPP
DAPSDEKASQLAQLQSAIFNLSPPPQQPQLQADDGSLMFVTAHSAQRELEVLHDRLLAWL
DVDPALQPREVMVMVPDMPAFAPHIHAVFGRFSPGQPRYIPYSVADTTPRQSPLVQALEQ
LLNLPNARLSLADWLGLFEVAAVRERFGLDEAAVRQVQQWLAAAGVRWGLDATHRLSWGL
PDGALGLEQNTWAFGLRRLLLGYALGNVVGSAARSAVGSAVGSAVGSAVGTNAGLDAFGE
SVASPASQPDSESPSSTIWCDTLAQPALSGLDAPLAAGLLNWIAAIEQTLPMLQLEQTPN
QWGQTLQALVERFFAPADDADARAIERLLAPLEVWLQACAEAALDTPLLLEVVREHWLAN
IAESGLQQRFFGGGVQFGTLMPMRSIPFKVIGLLGMNDGAYPRVQAPRDFDLMASSWRAG
DRSRREDDRYLFLEALLSARQKLYISWQGHSAADNSVRPPSVLVAQLLDVVNASWVPARV
PQAQPLQPFSEAYFEAGSAFQTFDADWASIRPLALIDKAPVAIEKISNQPIDTTDAGGDG
AAAPPSSLTLGDLQRLLRQPVDVFFRNRLQVEFDALEALEQEDEPFALNHLQQHQAGAAL
LQADANAAALRSLRAAGSLPLAGFGTRLADALMNKAQTVLEARAPWLQRYPQALAALPVA
LTLPNASPSPSPSPSPSPSPVPVPVPVPVPVPVPVPVPVPGPGPGPGPATAPSLEGQTVP
TLTGTLTGIWSQGSDASAPCLQLAERTGAVLQGKGASSVARLHVLVGLWVRHLAACASGL
HMTSVQLGVDGEVVLQPMRADAASAALGKLLQAYAGAWAQPLPVACKTAWAYLLAERQNQ
ALVAAGKPAKDPHEAAREAFEGGQRGGELAESAYLQRAFVSYDGLADALPHWAQVLYGDL
LAHIDASAEVSP
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgaacctccaagccaccccggctgctgaccccaacacaccacgcggcttcatggtgctg
catagcaaccggctggaagacctgcgtgacctgctggtgaactacgttgccgcgcacccg
ctcagccccctggagcctgaggtgatcttgctgcaaagcaacggcatgaagcattggctg
gagctggcgctggccgacgacagcgctttgggcatttgcgccgccacccagatggcgctg
cccagcggctacctgtggcagatgtaccgcgcggtgctggggccagacgcggtgcccgaa
cacatgccgtttgacaaggccgcgttgctgtggcggctggtgcgcctgctgcccgctttg
tgcgcggcgaacccggtctatgcgccgctgcagcgttacctttcaggtgacaacccggcg
cgcaagttgtaccagttggccgagcaggtggcagacgtgctggacgcttaccaaagttac
cgcgccgactggctggccgactgggctcaaggccttgaccagttgcgtgggccgctgggc
gcaccgcttgtgctgccgccagaacacgcctggcaggcgcagctttggcgcgacatccgc
aaagacgttggcccggcgcgggccgaggcttcacgggccagcgtgcatgaacgctttttg
gccgcgctggccgatcaggttaattctgaaactgatagcaagccgcgcttgccaggcttg
ccccgcaggctgatggtgtttggtatttcgtcgctgcccatgcaggcggtgcaggcgctg
gcggcactcgggcaggtgtgccaggtgatgctgctggtgcaaaacccatgccagtatttc
tggggtgacatcgttgaaggccatgcggcgctgcgcgcgcaggtgcgccgcaggcagcag
ggcaagccgcaggcatcggaggcaaaagcgatgctgcccgccgcgcccgcccagccgctg
ctggcctcctggggcaagcaggggcgtgactatttgcatttgctggacggttttgatgag
cctgagcgctaccgcgcgcactggagccgggtggatgtgtttgttgacccggcaccgcct
gacgcaccatctgatgaaaaagcctcgcaactggcacaactgcagtcggccatcttcaac
ctgtcgccaccgccgcagcagccgcaactgcaggctgatgatggctcgctgatgtttgtt
accgcccacagcgcccagcgtgagctggaggttttacacgaccgcctgctggcttggctg
gacgtcgacccagccctgcagccgcgcgaggtgatggtgatggtgcccgacatgcccgcc
tttgcgccccacatccacgcggtgtttgggcgtttttcgccggggcagccgcgctatatc
ccgtattcggtggccgacaccacgccgcggcaaagcccactggtgcaggcgctggagcag
ctgctgaacctgcccaacgcgcgcctgtctctggctgactggctgggtttgtttgaagtg
gcggcggtgcgtgagcgctttgggctcgatgaagccgccgttcgccaagtgcagcagtgg
ctggccgccgctggggtgcgctgggggctggacgctacccatcgcctgtcctggggtttg
cctgacggggcgcttgggctggagcaaaacacctgggcattcgggctgcgccgcttgttg
ctgggatatgcgctggggaatgtggtgggaagtgcggcgagaagcgcggtgggaagtgcg
gtgggaagtgcggtgggaagtgcggtgggcacgaacgccggtttggatgcgtttggcgag
tcagtcgcttcgcccgccagccagccagatagcgagtcacccagcagcaccatctggtgc
gacaccctggcgcaacccgcactcagcggcttggacgcaccgctggcggctggcctgttg
aactggatcgcagccattgagcagaccctgcccatgctgcagctggaacaaacccccaac
cagtggggccagaccttgcaagccttggtcgagcgctttttcgccccggcagacgacgcc
gatgcgcgcgccattgagcgtcttttggccccgctggaggtctggctgcaagcctgcgcg
gaggctgctctggacacaccgctgctcctggaagtggtgcgcgagcactggctggccaac
attgccgagtccggcttgcagcagcgcttttttggcggcggcgtgcagtttggcacgctc
atgccgatgcgctccatcccgttcaaagtaattggcctgttgggcatgaacgatggcgcc
tacccgcgtgtgcaggccccgcgcgacttcgacctgatggccagcagctggcgcgccggt
gaccgctcgcgccgcgaagacgaccgctacctgtttctggaggcgctgctgtcggcacgg
caaaagctctacatcagctggcaaggccacagcgcggcagacaacagcgtgcgcccgccg
tcggtgctggtggcgcagctgctggatgtggttaacgccagctgggtacctgcgcgcgtg
ccgcaggcgcagccactgcagccgttctctgaagcctattttgaggcgggttcagcgttt
cagacctttgatgcagattgggcatcaattcggcctctagcccttatagataaagcgcca
gtagctattgaaaaaatatcaaatcagccgatagacacgactgatgcggggggtgatggt
gctgccgcgccgccgtccagcctgacgctgggcgacttgcagcgcctgctgcgccagccg
gtggacgtgtttttccgcaaccgcctgcaggtggagtttgacgcgctggaggcgctggag
caagaagacgagccctttgccctgaaccatttgcagcaacaccaggccggtgccgcgctg
ctgcaggccgacgcaaacgccgccgcgctgcgcagcctgcgcgcggcaggcagtttgccg
ctggccggttttggcacccgcctggccgacgcactgatgaacaaagcgcaaaccgtgcta
gaggcccgcgcgccctggctgcagcgctacccgcaggcgctggcggcgctgccggtggcg
ctgacgctgccaaacgcaagcccaagcccaagcccaagcccaagcccaagcccaagccca
gtcccagtcccagtcccagtcccagtcccagtcccagtcccagtcccagtcccagttcca
ggcccaggcccaggcccaggcccagcgaccgctccgtcgcttgaaggccagacggtgccc
acgcttaccggcacgctcaccggcatttggtcacagggcagcgatgccagcgcgccctgt
ctgcaactggccgagcgcaccggtgcggtgttgcaaggcaaaggcgcgtcctcggtggcg
cgcctgcatgtgctggtgggtttgtgggtgcggcatctggcggcatgcgccagcggacta
cacatgaccagcgtgcagctgggcgtagacggcgaagttgttttgcaaccgatgcgcgcg
gacgcagccagcgccgccctgggcaaactgttgcaagcctacgccggcgcctgggcgcaa
cccttgccggtggcctgcaaaaccgcctgggcctacctgctggcagagcggcaaaaccag
gcgctggtggcggctggcaagcccgctaaagacccgcatgaagccgcccgtgaagccttt
gaaggcggccaacgcggtggcgaactggccgaatccgcctacctgcagcgcgcctttgtt
agttacgacggtctggcagacgcgctgccgcactgggcgcaggtgctgtatggcgatctg
ctggcgcatattgacgcgtctgctgaggtgtcgccatga
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