Rhodoferax antarcticus: RA876_10265
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Entry
RA876_10265 CDS
T04655
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rac
Rhodoferax antarcticus
Pathway
rac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RA876_10265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rac03400
]
RA876_10265
Enzymes [BR:
rac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RA876_10265
DNA repair and recombination proteins [BR:
rac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RA876_10265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
IstB_IS21
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
APW46686
LinkDB
All DBs
Position
complement(2120332..2124012)
Genome browser
AA seq
1226 aa
AA seq
DB search
MDLPKLTPGKRYTLLRPVGSADALLLAQLALRDKKSGKVTAIITADAPDAQRLIDEMTFF
APELRCVLFPDWETLPFDTFSPHQDLISERLATLWRISQHDKDTGADVVLVPATTALYRL
APPSFLAGTTFHFKVKQKLNESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSP
MPYRVDLFDDEIDSIRTFDPDSQRSLFPVPEVRLLPGREFPMDDDARARFRSRWRELLEG
DPTRSRIYKDMGHGVATAGIEYYLPLFFEETATVFDYLGDGATVVLHGDLEPAFAHFWQD
TRERYRLVQGDPERPVLPPDALFLSAEQFYTRVNQHAQLALRPTQAQTGPHPSPLPGGEG
TRPDAGVVDAGVLVGKEPTKPDANTSSEERKHARVLPPLPPEDGGSVGVSAYAEFGALAP
MTVVRGAEDPLARLKSHIRNTQQRILVLAESDGRRASLLDFLRSSQFDPPTFDSLAEFLA
SDEKIGIATSSLATGFSWPESSIDFVTETELFAASHATRKRKKQEQVSDVEALIKDLSEL
KVGDPVVHNAHGIGRYQGLINLDLGNKLPNGDAEIQEFLHLEYADKAVLYVPVSQLQLIS
RYSGVSPDEAPLHKLGSGQWDKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPSDY
ETFANDFGFEETADQKAAIHAVVQDMISPRPMDRLICGDVGFGKTEVALRAAFVAITGGK
QVAFLAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSGKEITAALKGVADGTVDIVVGT
HKLLSESTKFKDLGLLIIDEEHRFGVRHKEQMKAFRAEVDVLTLTATPIPRTLGMALEGL
RDLSVIATAPQRRLAIKTFVRTEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRAKLE
ELLPEARIAVAHGQMPERQLESVMRDFVAQRSNVLVCSTIIETGIDVPTANTIVMSRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDLEGLTKQATLRLDAIQAMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMLEVGFQLYNEMLSEAVRCLKAGIEPDLLNPMNVATDINLHAPA
LLPDDFCGDVHLRLSFYKKLATAKTANQIDALLEEIIDRFGKLPAQAQTLIDVHRLRVLS
QPYGVTKVDAAPGMITITFKKNPPIDAMKIIALIQKNKHIKLAGNEKLRIERALPDAKDR
AQMVRDVLKSLGHPVAELAKVATTVA
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcctaagctcacccccggaaaacgttacacactgctccgcccggtgggctcg
gcagacgcgttgctgctggcccagctcgcgctgcgtgacaaaaaaagtggcaaggtcacc
gccatcatcacagccgacgcgcctgacgcccagcgtctgattgacgagatgacttttttt
gcgccggaactgcgctgcgtgctgtttccggactgggaaaccctgccttttgacaccttt
tcgccgcatcaggatctgatcagcgagcgactggccacgctgtggcgcatcagccagcat
gacaaggacaccggtgccgacgtggtgctggtgcccgccaccaccgcgctctaccgcttg
gccccgccgagctttctggcaggcaccacttttcatttcaaggtcaagcaaaagctcaac
gaatccaaactcaaggcacagctcaccctggcgggctacagccatgtcacgcaggtggtc
agcccgggtgaatacgcggtgcgtggcggcctgattgacttgtttccaatgggctccccc
atgccgtaccgggtggacctgtttgacgacgagattgacagcatccgcacctttgacccc
gacagccagcgcagcctgttcccggtgcccgaagtgcggctgctaccggggcgcgagttc
ccgatggacgacgatgcccgggcgcgctttcgtagccgctggcgcgagctgctggaaggt
gacccaacccgcagccgcatctacaaagacatggggcacggcgtggccaccgccggcatt
gagtactacctgccgctgttttttgaggaaacagccaccgtgtttgattacctgggtgat
ggcgccacggtggtgctgcatggcgacctggaaccggcctttgcgcacttctggcaagac
acccgcgagcgttaccggctggtgcaaggtgacccggaacgcccggtgctgccgccggat
gcgctgtttttgagcgcggagcagttttacacccgggtcaatcagcatgcgcagttggcg
ttgcggccaacgcaggcgcagaccggccctcaccctagccctctcccggggggagagggg
acgaggccagatgcgggcgttgtagatgcgggcgttctcgtagggaaagagccgacaaag
ccagatgcaaatacctcgtcggaggaacgcaaacacgccagggtattgccccctctcccc
ccggaagacggcgggagtgtgggcgtgtcggcctacgcagaattcggcgcgctggcgcct
atgaccgttgtgcgcggcgcagaagacccactggcccggctgaaaagccacatccgcaac
acccagcagcgcattctggtgctggccgagagcgatggtcggcgcgccagtttgctggac
tttttgcgcagcagccagtttgacccacccacgttcgactcgctggccgagtttctggcc
agtgacgaaaagattggcatcgccaccagcagcctggccacagggttcagctggcccgag
tccagcatcgactttgtcaccgaaaccgagctgtttgccgccagccacgccacccgcaag
cgcaaaaagcaggagcaagtcagcgacgtcgaagcgctgatcaaggacctgagcgagctc
aaggtcggtgacccggtggtgcacaacgcacatggcattggtcgctatcagggcttgatc
aatcttgacctgggtaacaaattacccaatggcgacgcagagatacaagagtttcttcat
ctggaatatgcagacaaggcggtgctatatgtgccagtgagccaactgcagttgatcagc
cgttactcgggcgtgagccccgacgaggcgccgctgcacaagctcggtagcggccagtgg
gacaaggctaagcgcaaagccgcggaacaagtgcgcgacagcgccgccgagttgctcaac
atctacgcccgccgcgctgcgcgtgagggccatgccttccgttacagcccgagcgactac
gagacctttgccaacgactttggttttgaggaaaccgctgaccagaaagccgccattcac
gcggtggtgcaggacatgatcagcccacgcccgatggaccggctgatctgcggcgacgtg
ggttttggcaaaaccgaggtggccctgcgcgccgccttcgtcgccattaccggcggcaag
caggtggcgtttctggcgcccaccacgctcttggccgaacagcattaccagacactggtg
gaccgttttgccaaatggccggtgaaagtggccgagatgagccgattccgctccggcaaa
gaaatcaccgccgcgcttaaaggcgtggcagatggcaccgttgacatcgtggtcgggacc
cacaagctgctgagcgaatccaccaagttcaaagacttgggcctgctcatcatcgacgag
gagcaccgcttcggcgtgcgtcacaaagagcagatgaaagcctttcgcgctgaagtggat
gtgctcacgctcaccgccacgccgattccgcgtacgctgggcatggcgctggaggggctg
cgtgacctgagcgtgattgccaccgcgccgcagcgccgcctagcgatcaagacttttgtg
cgcaccgagggcaatggcgtgatccgtgaggcggtgttgcgtgaattgaagcgcggcgga
caggtgtactttttgcacaacgaggtcgaaacgattgagaaccgccgcgccaaacttgaa
gagctgctgcctgaagcgcgcattgccgtggcgcacggtcagatgcccgagcgccagttg
gaatccgtgatgcgcgactttgtggcgcagcgcagcaatgtgctggtgtgctccaccatc
atcgagaccggcattgacgtgcccaccgccaacaccatcgtcatgagccgtgccgacaaa
tttggcttggcgcagttgcaccagttgcgcggccgtgtgggccgcagccaccaccaggcc
tacgcctatttgatggtgcccgatctagaaggcctgaccaagcaagccaccctgcggctg
gatgccattcaggccatggaagaactcggcagtggtttctatttggcgatgcacgatctg
gagattcgtggtgccggtgaagtgctgggcgaaaaccagagcggcaacatgctggaagtg
ggctttcagctttacaacgagatgctttcagaggcggtgcgctgcctcaaagccggcatc
gagcccgatttgttgaacccgatgaacgtggccaccgacatcaacctgcacgcgccggcg
ctgttacccgacgacttctgcggcgacgtgcacctgcgcctatcgttttacaaaaagctg
gccaccgccaagaccgccaaccagatcgacgccctgctggaagagatcattgaccgtttt
ggcaaactccccgcgcaggcacaaaccttgatcgacgtgcaccgcttgcgtgtcttgagc
caaccgtacggcgtcaccaaagtcgatgccgcacccggcatgatcaccatcaccttcaag
aaaaacccgccgattgatgcgatgaaaatcatcgccctgatccagaaaaacaaacatatc
aagctggcaggtaacgaaaagctgcgcattgagcgggctttgccagacgccaaagaccgg
gcgcagatggtgcgcgatgtgttaaagagtttggggcatccggtggctgaattggcaaag
gtagcgacgacggttgcatga
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