KEGG   Rhizobium acidisoli: CO657_29205
Entry
CO657_29205       CDS       T06438                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rad  Rhizobium acidisoli
Pathway
rad03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rad00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CO657_29205 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rad03400]
    CO657_29205 (ligD)
Enzymes [BR:rad01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CO657_29205 (ligD)
DNA repair and recombination proteins [BR:rad03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CO657_29205 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase
Other DBs
NCBI-ProteinID: QAS81970
LinkDB
Position
pRapFH23c:71542..74187
AA seq 881 aa
MANDNLSTYRSKRDFQKTAEPSGEKQIARSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHHDAFSVEADGAAVLEEN
DTSVASGRTMDTIAAGKGRKPKPFMIKGGDIKSDAVWDSNHGLAAEDGKVEARADRTPKT
AGSVDLPDFIAPQLCQTLERPPAGEGWIHEIKFDGYRIQMRILDGEVTLKTRKGLDWTGK
YPEIAEAASALPDAIIDGEICALDDHGAPDFAALQAAISEGKTGDLVYFAFDLLYEGGED
LRSLPVVERKARLQSLLSDAGDDPRLGFVEHFETGGDAVLRSACKLSLEGIVSKQSDAPY
QSGRTESWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAKKVE
TLLPKLQALEAAKSPFTGIGAPKKEAEVTWVKPKLVAEIEFAGWTADGIVRQAAFKGLRE
DKPAREVKAERPAKPAETDVPEPLAEVMAKPTRRKGAKAEVMGVMISNPDKPLWQDANDG
RPVTKEELGRYYEAVGSWMIAHIEGRPCSIIRTPDGLGGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCEPHKPEVPGRLVFDLDPGPDVPFSTVVS
AAREMRDRLDALGLVSFCKTTGGKGVHVVTPLAINKRKPLSWAEAKGFAHDVCQQMARDN
PDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPALLSKSSAWEDYCDGQRPLEQAIKRLGKALSAA
NT seq 2646 nt   +upstreamnt  +downstreamnt
atggccaatgacaacctatcgacctatcgatcgaagcgcgactttcaaaaaacggcggag
ccgagcggcgagaagcagatcgcacgcagcaaccgccgtcgcttcgtcatccagaaacat
gacgccacgcggctgcattacgacctgcggctcgagctcgacggcgtgttcaaatcctgg
gctgtcaccaaaggcccatcgctcgatccccacgacaagcggctggccgtcgaggtcgaa
gatcacccgctcgattatggcgactttgaaggcacgatcccgaaaggacaatatggcggc
ggcacggtgatgttgtgggaccgcggctattgggagcccgagggaaagaagagcccggag
caggcgcttgccaagggcgatttcaagttcacgctggaaggtgaaaggctgcacggcagc
ttcgttctggtgcgcatgcgcaatgatcgcgatggcggcaagcgaaccaactggctgctg
atcaagcaccacgacgcgttctcggtcgaggcggatggcgcagccgtcctggaagagaac
gacacctccgtcgcctccggccggacgatggatacgattgccgccggcaagggccgcaag
ccgaagccgttcatgatcaagggcggcgatatcaagtcggatgccgtctgggacagcaat
cacgggctggccgcagaagacgggaaggtggaggcgcgagccgacaggacgccgaaaacg
gctggaagtgtcgacctcccggatttcatcgcaccgcagctttgccagaccctggagcgg
ccgccggccggcgagggctggattcacgagatcaagttcgacggctaccgtatccagatg
cgcatactcgacggcgaggtgacgctgaagacccgcaaagggcttgactggaccggcaaa
tatccggagatcgccgaggcggcatccgcgctgcccgacgccatcatcgacggcgaaatc
tgcgctctcgacgaccatggtgcgccggatttcgcagccctgcaggcggccatttcggaa
ggcaagacgggcgatctcgtctatttcgccttcgaccttctttacgagggtggcgaggac
ttgcgatccctgcctgtcgtcgagcgcaaggcccggcttcaaagcctgctgtcggatgcc
ggcgatgaccctcggctcggtttcgtcgagcatttcgaaaccggcggcgatgcggtcctc
cgctccgcctgcaagctctctctggaaggcatcgtatccaaacaaagcgatgcaccctat
caatccggccgcaccgaaagctgggcgaagtcaaaatgccgcgccggccacgaagtggtg
atcggcgcctatgccaagaccaacggtaaattccgatccttgctggtcggcgtctaccgc
ggcgaccacttcgtctatgtcggccgcgtcggcacgggatatggcgccaagaaagtggaa
acgctgcttccgaaactgcaagcgctcgaggcggcaaaatcgccctttaccggcatcggc
gcgccgaagaaggaggccgaggtcacctgggtgaagcccaagctcgtggcggaaatcgag
tttgccggctggaccgccgacggtatcgtccgccaggcggccttcaagggcctgcgcgag
gacaaaccggccagggaggtcaaggccgaacggccggccaaaccggcagagaccgacgtg
ccggagccgttggccgaggtgatggcgaagcccacccgccgcaaaggcgccaaagccgag
gtgatgggcgtgatgatctccaatccggacaaaccgctatggcaggatgccaatgacggc
aggccggttaccaaggaagaactgggccgctattatgaagccgtcggcagctggatgatc
gcgcatatcgaggggcgcccctgttcgataatccgtacgcccgatgggcttggcggcgag
caattcttccagcgccatgcaatgcccggcacctccaaccttctcgaactggtcaaggtc
ttcggcgacaaaaagccctatctgcagatcgaccgggtcgagggtctggctgccgtggcg
cagatcggcgccgtcgagctgcacccctggaattgcgaaccgcataagccggaggtaccg
ggccggctggtattcgacctcgaccccggacccgacgtgccgttctcgacggtcgtttcc
gccgcccgcgaaatgcgcgaccgtctcgacgcgctgggtctcgtcagtttctgcaagacc
acaggcggcaagggtgtgcacgtcgtcacgccgcttgcgatcaacaagcgcaagccgctt
tcctgggcagaagcgaagggcttcgcgcacgacgtctgccagcagatggcgcgcgacaat
cccgatctctatctgatcaagatgaccaagagcctgcggaacggccgcatcttcctcgac
tatctccgcaacgatcggatggcgacggctgtggcgccattgtcgccccgggctcggccg
ggcgccaccgtctcgatgccgctgacctggacccaggtcaaatccgatctcgacccgaaa
cgcttcaccatccgcactgtgccggcactgctgtcgaaatcgtcagcctgggaggattat
tgcgacggccagcggccgctggagcaggcgatcaaacggctgggcaaagctttaagcgcg
gcttga

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