Rhizobium acidisoli: CO657_29205
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Entry
CO657_29205 CDS
T06438
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rad
Rhizobium acidisoli
Pathway
rad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CO657_29205 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rad03400
]
CO657_29205 (ligD)
Enzymes [BR:
rad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CO657_29205 (ligD)
DNA repair and recombination proteins [BR:
rad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CO657_29205 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QAS81970
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All DBs
Position
pRapFH23c:71542..74187
Genome browser
AA seq
881 aa
AA seq
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MANDNLSTYRSKRDFQKTAEPSGEKQIARSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHHDAFSVEADGAAVLEEN
DTSVASGRTMDTIAAGKGRKPKPFMIKGGDIKSDAVWDSNHGLAAEDGKVEARADRTPKT
AGSVDLPDFIAPQLCQTLERPPAGEGWIHEIKFDGYRIQMRILDGEVTLKTRKGLDWTGK
YPEIAEAASALPDAIIDGEICALDDHGAPDFAALQAAISEGKTGDLVYFAFDLLYEGGED
LRSLPVVERKARLQSLLSDAGDDPRLGFVEHFETGGDAVLRSACKLSLEGIVSKQSDAPY
QSGRTESWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAKKVE
TLLPKLQALEAAKSPFTGIGAPKKEAEVTWVKPKLVAEIEFAGWTADGIVRQAAFKGLRE
DKPAREVKAERPAKPAETDVPEPLAEVMAKPTRRKGAKAEVMGVMISNPDKPLWQDANDG
RPVTKEELGRYYEAVGSWMIAHIEGRPCSIIRTPDGLGGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCEPHKPEVPGRLVFDLDPGPDVPFSTVVS
AAREMRDRLDALGLVSFCKTTGGKGVHVVTPLAINKRKPLSWAEAKGFAHDVCQQMARDN
PDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPALLSKSSAWEDYCDGQRPLEQAIKRLGKALSAA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccaatgacaacctatcgacctatcgatcgaagcgcgactttcaaaaaacggcggag
ccgagcggcgagaagcagatcgcacgcagcaaccgccgtcgcttcgtcatccagaaacat
gacgccacgcggctgcattacgacctgcggctcgagctcgacggcgtgttcaaatcctgg
gctgtcaccaaaggcccatcgctcgatccccacgacaagcggctggccgtcgaggtcgaa
gatcacccgctcgattatggcgactttgaaggcacgatcccgaaaggacaatatggcggc
ggcacggtgatgttgtgggaccgcggctattgggagcccgagggaaagaagagcccggag
caggcgcttgccaagggcgatttcaagttcacgctggaaggtgaaaggctgcacggcagc
ttcgttctggtgcgcatgcgcaatgatcgcgatggcggcaagcgaaccaactggctgctg
atcaagcaccacgacgcgttctcggtcgaggcggatggcgcagccgtcctggaagagaac
gacacctccgtcgcctccggccggacgatggatacgattgccgccggcaagggccgcaag
ccgaagccgttcatgatcaagggcggcgatatcaagtcggatgccgtctgggacagcaat
cacgggctggccgcagaagacgggaaggtggaggcgcgagccgacaggacgccgaaaacg
gctggaagtgtcgacctcccggatttcatcgcaccgcagctttgccagaccctggagcgg
ccgccggccggcgagggctggattcacgagatcaagttcgacggctaccgtatccagatg
cgcatactcgacggcgaggtgacgctgaagacccgcaaagggcttgactggaccggcaaa
tatccggagatcgccgaggcggcatccgcgctgcccgacgccatcatcgacggcgaaatc
tgcgctctcgacgaccatggtgcgccggatttcgcagccctgcaggcggccatttcggaa
ggcaagacgggcgatctcgtctatttcgccttcgaccttctttacgagggtggcgaggac
ttgcgatccctgcctgtcgtcgagcgcaaggcccggcttcaaagcctgctgtcggatgcc
ggcgatgaccctcggctcggtttcgtcgagcatttcgaaaccggcggcgatgcggtcctc
cgctccgcctgcaagctctctctggaaggcatcgtatccaaacaaagcgatgcaccctat
caatccggccgcaccgaaagctgggcgaagtcaaaatgccgcgccggccacgaagtggtg
atcggcgcctatgccaagaccaacggtaaattccgatccttgctggtcggcgtctaccgc
ggcgaccacttcgtctatgtcggccgcgtcggcacgggatatggcgccaagaaagtggaa
acgctgcttccgaaactgcaagcgctcgaggcggcaaaatcgccctttaccggcatcggc
gcgccgaagaaggaggccgaggtcacctgggtgaagcccaagctcgtggcggaaatcgag
tttgccggctggaccgccgacggtatcgtccgccaggcggccttcaagggcctgcgcgag
gacaaaccggccagggaggtcaaggccgaacggccggccaaaccggcagagaccgacgtg
ccggagccgttggccgaggtgatggcgaagcccacccgccgcaaaggcgccaaagccgag
gtgatgggcgtgatgatctccaatccggacaaaccgctatggcaggatgccaatgacggc
aggccggttaccaaggaagaactgggccgctattatgaagccgtcggcagctggatgatc
gcgcatatcgaggggcgcccctgttcgataatccgtacgcccgatgggcttggcggcgag
caattcttccagcgccatgcaatgcccggcacctccaaccttctcgaactggtcaaggtc
ttcggcgacaaaaagccctatctgcagatcgaccgggtcgagggtctggctgccgtggcg
cagatcggcgccgtcgagctgcacccctggaattgcgaaccgcataagccggaggtaccg
ggccggctggtattcgacctcgaccccggacccgacgtgccgttctcgacggtcgtttcc
gccgcccgcgaaatgcgcgaccgtctcgacgcgctgggtctcgtcagtttctgcaagacc
acaggcggcaagggtgtgcacgtcgtcacgccgcttgcgatcaacaagcgcaagccgctt
tcctgggcagaagcgaagggcttcgcgcacgacgtctgccagcagatggcgcgcgacaat
cccgatctctatctgatcaagatgaccaagagcctgcggaacggccgcatcttcctcgac
tatctccgcaacgatcggatggcgacggctgtggcgccattgtcgccccgggctcggccg
ggcgccaccgtctcgatgccgctgacctggacccaggtcaaatccgatctcgacccgaaa
cgcttcaccatccgcactgtgccggcactgctgtcgaaatcgtcagcctgggaggattat
tgcgacggccagcggccgctggagcaggcgatcaaacggctgggcaaagctttaagcgcg
gcttga
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