Rhizobium acidisoli: CO657_29310
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Entry
CO657_29310 CDS
T06438
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rad
Rhizobium acidisoli
Pathway
rad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CO657_29310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rad03400
]
CO657_29310
Enzymes [BR:
rad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CO657_29310
DNA repair and recombination proteins [BR:
rad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CO657_29310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QAS81991
LinkDB
All DBs
Position
pRapFH23c:complement(93808..94860)
Genome browser
AA seq
350 aa
AA seq
DB search
MTRSRRPSLPFLNESNATLQSRPIRKRDPNQPSLPFDPMPARVEPCLALLKRSVPIGPDW
LYEAKWDGYRLAIHIEPKGVRVITRGGHDWTHRFPAIAAAAKELGVTTAILDGEAVVMDD
HGRSDFGALQRSLGGRGGKRASSESILYAFDLLYLDGHDLTGTELAVRRHLLEDLIPEGN
RTIRFSEEIDLPAEDLLEHACHHHMEGIIAKHRDRPYSSGRTGDWLKIKCVESESFMIVG
YEQSASARGGIGSLLLAGKKGFDWISVGSVGTGFSASEAEHLKKTLDRLKTSRPAVPLKG
KRYVFVQPTLIAEIEFRGWTDDGSLRHASYKGLREVQDNAAVFDMTGLGG
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgctcgcgccgcccctcattgccattcctcaacgagtccaatgcaacgctgcag
tctcgtccgatccgcaagcgcgatcccaaccagccaagccttccgttcgatccaatgccg
gcaagggtcgagccatgcctcgcattgctgaagcgcagcgtgccgatcgggccggattgg
ctctacgaggcgaagtgggatggctaccggctagcgatccacatcgagccgaagggcgtt
cgtgtcatcacccgcggcggccatgactggacgcatcgttttcccgccatcgccgctgcg
gccaaagaactcggtgtgaccaccgccatactggacggggaagccgtggttatggatgat
cacggccggtcggatttcggcgcgctgcaacgttcgctcggcggtcgcggcggcaagcgg
gcctcgagcgagtccattctctacgccttcgaccttttgtatcttgacgggcatgacctc
accggcaccgagcttgccgtacgccggcaccttcttgaagacctgataccggaaggcaat
cggacgatccgcttttccgaagaaatagacctgccggccgaggacctcctcgagcacgcc
tgccaccatcatatggaaggcatcatcgccaaacatcgcgaccggccctacagcagtggc
cgcacgggcgactggctgaagatcaagtgcgttgagagcgagagtttcatgatcgtcggt
tacgaacaatcggcatccgcccgcggcggcatcggcagtctgctgctcgccggcaagaag
ggtttcgactggatttccgtgggatcggtcggaactggtttcagcgccagcgaagccgag
cacctgaaaaagacgctcgaccggttgaaaacgagccggccggccgtccccctgaagggc
aaacgctacgtcttcgtgcagccgaccctcatcgccgagatcgagttccgtggctggacg
gatgacggcagtctccgccatgcgtcgtataaggggctgcgcgaagttcaggacaatgcg
gccgtattcgatatgaccggcctcggcggttga
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