Rhizobium anhuiense bv. trifolii: NE851_02435
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Entry
NE851_02435 CDS
T08535
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
raw
Rhizobium anhuiense bv. trifolii
Pathway
raw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
raw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NE851_02435 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raw03400
]
NE851_02435 (ligD)
Enzymes [BR:
raw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NE851_02435 (ligD)
DNA repair and recombination proteins [BR:
raw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NE851_02435 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UTS88434
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All DBs
Position
pRA_T24_1:complement(494216..495262)
Genome browser
AA seq
348 aa
AA seq
DB search
MMRPRRPSLPLLDESRLTLLSRPIRKRDPDQPSLPFDPMPSRVEPCLALLKPTVPIGSDW
LYEVKWDGYRLAIHIEPKRVRVITRGGHDWTHRFPTIAAAAKDLGVTTAILDGEAVVLDE
RGRSDFAALQRSLGGRGGKRVSTESSLFAFDLVYLDGHDLTRTELAVRRHLLEDLVPEDG
DGAIRLSEEIELPAEDLLEHACHHQLEGIIAKHRDRPYRSGRTGDWLKIKCVQSESFMIV
GYEQSAVARGGIGSLLLAGRKGFDWAFVGSVGTGFTAKDAEHLKKTLDPLKTNRPVVPLR
GKRFVFVQPTLIAEIEFRGWTGDGNLRHASYKGLREIQDNAAVYDLTE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgtccacgtcgcccctccctgccgttgctcgacgagtcacgcttaacgctgctg
tctcgtccgatccgcaagcgcgaccccgaccagccgagtctacccttcgatccaatgccg
tcacgcgtcgagccatgtctcgcgctgctcaagccgaccgtgcctatcggatcggattgg
ctctatgaggtgaagtgggacggttatcgattggcaatccacatcgagccaaagcgcgtg
cgggtcatcactcgcggcggccatgactggacccaccgcttccccaccatcgctgctgcg
gcaaaagaccttggggtaacaactgccatcctcgatggtgaggcggtcgttcttgacgag
cggggccgatctgattttgccgccctgcagcgttcgctcggcgggcgggggggcaaacgg
gtatcgaccgagtccagccttttcgcgttcgacctggtctatctcgatgggcatgatctg
acccgcaccgagcttgcagtgcgccggcacctgcttgaagaccttgtgccggaagacggc
gacggcgcgatccgtctttccgaggagatagaactgcccgccgaagacctgctcgagcac
gcctgccatcatcaactggaagggatcatcgccaagcatcgtgaccgaccttaccgaagc
ggccggaccggtgactggctgaagatcaagtgtgtccagagcgaaagcttcatgatcgtt
ggctacgagcagtcggcagtcgcgcggggcggcatcggcagcttgctgttggccggtagg
aagggattcgattgggcttttgtgggatcagtcgggactggattcactgcgaaggatgcc
gagcacctgaaaaagacgctcgatccgttgaagacgaaccggccggtcgttccgctgagg
ggcaagcgcttcgtcttcgtgcagccgacgctgatcgctgagatcgagtttcggggctgg
actggggacggcaacctccgtcatgcatcgtacaaggggcttcgggagatccaggacaac
gcggcagtgtatgatttgacggaatga
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