Rhizobium anhuiense bv. trifolii: NE851_12085
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Entry
NE851_12085 CDS
T08535
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
raw
Rhizobium anhuiense bv. trifolii
Pathway
raw02020
Two-component system
raw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
raw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NE851_12085 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NE851_12085 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
raw03021
]
NE851_12085 (rpoN)
Transcription machinery [BR:
raw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NE851_12085 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
PP_kinase_C
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
UTS91751
LinkDB
All DBs
Position
717186..718745
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AA seq
519 aa
AA seq
DB search
MALSANLFLRQTQSLVMTPQLMQSIQLLQMTHFELNQFIAQEVEKNPLLEFPSNDGEAGG
ERGESEDEQYAHQPEDAGSDDGYDNRTDALSSDWYDNGGSASTSRLNDELDANYTNVFPD
DGAPQRLDAPELVSQWKSMPGSGEGADYDLDDFVAGQVSLRDHLGQQIPFVLPDMADRLI
AQNFVDQLDDAGYLHADIVEAGERLGTSVTQAERVLAALQTLDPPGVFARSLAECLAIQL
RQKDRYDPAMQALVENLELLARRDFATLKRICGVDEEDLLDMLGEIRQLNPKPGSGFEAG
VSEAIMPDVVVRSSSEGGWLVELNPDTLPRVLVNQSYFSRVTKNGEDHAFLADCLQSANW
LTRSLDQRAKTIMKVASEIVRQQDAFLLHGVDHLRPLNLKTVAEAIKMHESTVSRVTSNK
YMLTPRGLFELKYFFTVSISAVEGGDSHSAEAVRHKIRALIMQESPDAVLSDDDIVDMLK
KGGVDLARRTVAKYREAMNIASSVQRRREKRALAKVAGF
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtccgccaatcttttcctgcgccagacccagtccctggtgatgacaccgcaa
ctgatgcaatccatccagttgctgcagatgacgcattttgaactcaaccagttcattgcc
caggaagtggagaagaatccgctgctcgaattcccgtcgaatgacggcgaggcgggcggc
gaacgcggcgaaagcgaagatgagcagtatgctcatcagccggaggatgccggttccgac
gacggctacgacaaccgcaccgacgcgctctccagcgactggtacgacaatggcggcagc
gccagcaccagccggctgaacgacgaactcgacgccaactacaccaatgtctttcccgat
gacggtgccccgcagcgcctcgatgcgccggagctcgtcagccagtggaaatcgatgccg
ggcagcggcgagggcgccgattacgatctcgacgatttcgtcgccggccaggtgtcgctg
cgcgatcatctcggccagcagatccccttcgtcctgcctgacatggccgaccggctgatc
gcgcagaatttcgtcgaccagctcgacgacgccggttacctgcacgccgatatcgtcgag
gcgggcgagaggctgggcaccagcgtcacgcaggccgagcgcgtgcttgccgccctgcag
acactcgatccgccgggtgttttcgcccgcagccttgccgaatgcctggcgatccagctc
agacagaaggaccggtacgatcccgccatgcaggcgctggtcgaaaacctcgaacttctg
gcgcggcgcgatttcgccacgctgaagcggatatgcggcgtcgacgaggaagatcttctc
gacatgctcggcgagatccgccagctcaatcccaagcccggcagcggtttcgaggcgggt
gtttccgaagcgatcatgccggatgtggtcgtcaggtcctcctcggagggcggctggctg
gtcgagctcaatccggatacgctgccgcgcgttctggtcaaccagtcctatttttcccgc
gtgacaaagaacggcgaggatcacgcctttctcgccgattgcctgcagagcgccaattgg
ctgacgcgcagcctcgaccagcgggcaaaaaccatcatgaaggtggcaagcgaaatcgtt
cgccagcaggacgccttcctgctgcacggcgtcgaccacctgcggccgctgaacctgaag
acggtcgccgaggcgatcaagatgcatgaatccaccgtcagccgcgtcacatcgaacaaa
tatatgctgacgccgcgcggcctcttcgaactcaaatatttcttcaccgtctcgatcagc
gccgtcgagggcggcgacagccattcggccgaggccgtccgccacaagatccgcgcgctg
atcatgcaggagagcccggacgcggtgctttccgacgacgatatcgtcgacatgctgaag
aagggcggcgtcgatctcgcccgccgcacggttgccaaataccgggaagcgatgaacatc
gcctcctcggtccagcgtcgccgcgagaagcgggcgcttgccaaggtcgctggcttctga
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