Rossellomorea aquimaris: U9J35_13340
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Entry
U9J35_13340 CDS
T09670
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
raz
Rossellomorea aquimaris
Pathway
raz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
raz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
U9J35_13340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raz03400
]
U9J35_13340
Enzymes [BR:
raz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
U9J35_13340
DNA repair and recombination proteins [BR:
raz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
U9J35_13340
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
WRP04901
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Position
2617871..2619733
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AA seq
620 aa
AA seq
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MKPMLPTLYDDLPENEDWLYEVKYDGFRGILYVHSENQISLQSRNGRELLPHFPEIEEQI
KTLLNERDLPTPFILDGEIAILRSSFSSEFFELQVRGRTRNKQRIDHAAAGRPVKFLAFD
LLQYGKKSFAPEAYLTRKEKLKEVFTFLQLPLEPSPSRPSSLQMVPYFKDSHEIWELVEK
DEGEGVVAKRKNGKWEAGKRGTSWVKSKNWKYCHCFITALDETNDYFHIGVFDNEKIIPI
GSFHFGLSREEKKTLKAMIKKNSTKNEQSIYYIDPAIIVEISYLNWYEGQLREPHFRRFL
FSIPPESCTMEKFMLDEASLPRGVEITHPNKELFQKVSMTKLDYVRYLRRMSVAILPFLQ
DRPLTCIRFPHGLFGESFYQKNTPDYAPSFIERYKEDNIDYTVCNNLETLIWLGNQLALE
FHIPFQRTKDTSVNEVVFDLDPPSRDQFSLAVKAASIMKELFDRLNLHSFVKTSGNKGLQ
VYIPIPPGYTWKDTGLFTEFIAHYLVTNYPEDFTIERLKKNRKGRLYVDYIQHGEGKTII
APYSLRGNEDALVATPLWWYEVNEDLHPEHFTIDVVLQRFQQMGCPFTKFEWVKEFQPFD
NVIQFLKQQSNDKKKSVPKA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgcttcctaccttatatgatgatctccctgaaaatgaggactggctatat
gaagtgaaatatgatggatttcgcggaattctctacgttcattctgagaatcagataagt
cttcaaagtcgaaacgggagggaattgctcccacacttcccggaaattgaagaacagatt
aaaactttactcaatgagagagacttacctacccctttcattttggatggagagattgcc
atattacgctcttccttcagcagtgaattctttgaattgcaggtaagaggcagaacgcgc
aataagcagagaatcgaccatgctgcagccgggagacccgttaaatttctggcattcgat
ttacttcagtatgggaagaaatcatttgcccccgaagcttaccttacaagaaaagaaaaa
ttgaaagaggtttttacctttcttcaattgccgttagaaccgtccccttctcgcccttct
tcccttcaaatggtcccctatttcaaggattcgcacgaaatatgggaacttgtagaaaaa
gatgaaggtgagggtgttgtcgccaagaggaagaatggtaagtgggaagcgggtaaacga
ggtacgagttgggttaaatccaagaattggaaatactgtcactgttttattactgcgttg
gatgaaacgaacgattactttcacattggcgttttcgataacgaaaagattattcctatt
ggatcatttcactttggtctttctcgtgaagagaaaaaaacattaaaagcaatgatcaaa
aagaatagtacgaagaatgagcaatccatttattacatagaccctgctataatcgtggaa
atttcatatttgaattggtatgagggtcaactgagagaaccacattttcgtcgatttcta
ttctccattcctccagaatcttgcacaatggagaaattcatgctggacgaagcatccctt
ccgcgtggggttgaaatcactcatccaaataaggaattatttcagaaagtctcaatgact
aagcttgattacgttcggtaccttcggagaatgtccgtcgctattttgcctttcctgcag
gataggccattgacttgtattcgttttccacacgggctctttggtgaatcattttatcaa
aaaaatacgcctgattacgccccttcatttattgaaaggtacaaggaggacaacatcgac
tatacggtatgcaataacttggagacattgatttggcttggaaatcagcttgcattggaa
tttcacattcctttccaaaggacgaaggatacatctgtcaacgaagtggtctttgactta
gatccacccagcagggatcaattctccctggcggttaaagcggcttccattatgaaagaa
ctattcgaccgactcaacctgcatagttttgtgaaaacgtcaggaaataagggactgcaa
gtgtatattcccataccaccgggatacacatggaaggacaccggcttgtttactgaattc
attgcacactaccttgtgaccaattatcccgaggattttacgatcgagcgtttaaaaaag
aaccgaaaaggcaggttatacgtggactacattcagcatggagaagggaaaaccatcatt
gctccctattcgttaagggggaatgaggatgctttagtcgcgactcccctctggtggtat
gaagtaaatgaggacctccatccagaacactttacaatagatgttgttttgcaaaggttc
cagcaaatgggttgtccctttactaaattcgaatgggtaaaagaatttcagccatttgat
aacgtgatccaatttttgaaacagcaatccaacgacaaaaaaaagagtgtcccaaaagct
tag
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