Rhodopirellula baltica: RB8189
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Entry
RB8189 CDS
T00134
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rba
Rhodopirellula baltica
Pathway
rba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB8189 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rba03019
]
RB8189 (deaD)
03009 Ribosome biogenesis [BR:
rba03009
]
RB8189 (deaD)
Enzymes [BR:
rba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RB8189 (deaD)
Messenger RNA biogenesis [BR:
rba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RB8189 (deaD)
Ribosome biogenesis [BR:
rba03009
]
Prokaryotic type
rRNA helicases
RB8189 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
CAD78509
UniProt:
Q7UG20
LinkDB
All DBs
Position
complement(4379339..4382134)
Genome browser
AA seq
931 aa
AA seq
DB search
MNEKRRRGCVGMQGFEGPGGLNRTADNQIQGSERVLLVWHSILTNSAATMTACETQRGCG
YLFKRTSFLMSDHPASNETLVDPTSELNSQERAQDTFEMSTTETVVDPSAQWAAHYANPV
IDPSEMPSPAVDESLLFYQADCTDEASDVIVEVQAEPAIELNTEPVQVEIAEPEQHVQEQ
PKSQEQPAESDAVASPDAVIAEPEVAREPEPANEAVVESQPVATMAPPVVEEPVAAAETA
ASPEPVVEPEVVAEQKPAVQSEPVAKQEQSVREELAPPAQSQSAQTEEPAKAEKAPESNE
PAEPLFRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFAL
PILSRVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQL
RRGVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQ
VALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEV
EETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVAT
DVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIEN
TTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESGKPMEMIA
AALAEMSQNGRPFLLKERPKKQRERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPRRPKGR
PLTPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDLPEGM
PSDIYQTLRKTWVAGKRLNLEEAGDVVDDFEGDGGRSNFRKEGFRKGKFSGNGGSGGKNF
SGGKRSFGNKSRNNGSTAPTAKRGKKKFKPS
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgagaagcggcgtcgtggttgtgtcggaatgcaagggttcgaaggtcctggagga
ctgaatcgaaccgcagacaaccagatccagggctctgaaagagtcctcttggtttggcat
tccatccttaccaattctgccgcgaccatgaccgcctgcgaaacgcagcgtgggtgcggc
tacctttttaagcgcacgagttttttgatgtctgatcatcccgcttccaatgaaacgttg
gtcgatcctacgtccgagttgaattcgcaagaacgagctcaggacacatttgaaatgtcg
acaaccgagacggtcgtcgatccttcggcacaatgggcggctcactatgccaacccagtg
attgatccgagcgaaatgccatcgccggctgtcgacgaatccttgctgttctatcaagcc
gactgcaccgatgaagcgtccgacgtgatcgtcgaagtgcaagcagagccagcgatcgaa
ctgaacacagaacctgttcaggtcgaaatcgctgaaccagagcagcacgttcaagagcaa
ccgaaatcgcaggaacagccagctgaatccgatgctgttgcatcaccagatgcagtgatc
gctgagcctgaggtggctcgcgaaccagaacctgcgaatgaagccgtggtggaatcgcag
cccgttgcaacgatggcgccacctgtcgtcgaagagcctgttgcggctgcggaaacagcg
gccagcccagaaccagtcgttgaaccggaagtggttgcggagcaaaagcccgcagttcaa
tcagaacccgttgctaaacaagaacagtctgttcgcgaagaattggctccgccagctcag
agccagtccgcacaaacagaagagcccgcgaaggcggagaaggcacctgagtcgaacgag
ccggctgagccactgttccgcgatttggacctgcgagcagaagttcaaaaagcggttgcc
gcatcgggttacgataaaccaactccaattcaagccgagatcatcccctacatgttggat
ggtcgcgacgttttggcacagtcgcaaactggcaccggcaaaacggctgcatttgcattg
ccgatcttgtcgcgtgtcgatgttcgcagccgtcgcccacaagtcctcgtgctggcacca
acacgcgaattggcgatccaagtggctcggtcgttcaccaagtacggtgctgatctgagt
ggtttccaggttgctgctatctacggtggacaagactacgaaccacaactcaaacagctc
cgtcgcggtgtccaagtcgtcgtcggcacaccgggccgagtcattgatcacgtcaaacgc
ggtacgttggatctcggttcgctcgattgccttgtgctcgatgaagccgacgaaatgctc
aacatgggattcttggaagacgttcagtttgtcctcgaaaaatcgcctgaaggacggcaa
gtcgcgttgttctctgcgacgttgccaaagccaatccgcaagatcgctgacgagtatctc
aacgacccagctcggatcacgatcaagtcaaagacgatcaccgccgcttcggttcgccag
cgtgcgttgtttgtttcaccacgcgacaaaattgatgcgttgactcgcatcttggaagtg
gaagaaaccgatggagtgatcgtcttcacgaagacaaaggactccacgctgagtgtggct
gaaaagctgagccagcaagggttttccgctatcgcactgaacggcgacatgccacagaag
gttcgagagcggacaattgaccaactcaagcgtggtcaactcgacgttttggttgcaacc
gacgtcgcggctcgaggtttggacgtgccacggatcagtcacgtgttcaactttgatttg
ccgcacgacagcgaatcgtatgtgcaccggattggtcgtaccggtcgagcgggacgcagc
gggcaagccatcatcttcttgaccaatgctcagcgtcgtcagcttcggttcattgagaac
acgaccaagcaacccattgaaatcatcgacatcccaacggttgccgatatcaacgaggct
cgcgtgcggcgtttcaagcaacgcatcaccgatgtttccgctgatcaggatttgacggtc
tacaaagacatgatcgctcagtacgcggaagaatctggcaaaccgatggagatgatcgct
gccgcactggcagaaatgagccagaacggacgtccgttcttgttgaaggaacgtcccaag
aagcagcgcgaacgttccgaccgagacaattctcgcggtcgtgactcatttgattcgaac
gatcgctccggcaatcgtggatccttcggcgatgatcgccctcgtcgtcccaaaggccgt
ccactcacacccgtcaaagaaggcatgactcgatatcgccttgatgtcggttggcaggac
ggagtcaaacccggcaacattgttggtgcagttgcaaacgaagctggtatcgatggcgaa
tacatcggcccgatcaacattcgcgactcgcacactttgatcgacctgcccgaaggcatg
ccctcggacatctatcaaacgcttcgcaaaacttgggtggccggcaaacggttgaacctt
gaagaagcaggtgacgtcgtcgatgacttcgaaggcgacggtggccgcagcaacttccgc
aaggagggtttccgcaaaggcaagttctctggcaacggaggttcgggcggcaagaacttc
agtggcggaaagcgttcgtttggcaataagtctcgcaataacggaagcaccgcacccacc
gcgaaacgcggcaagaagaagttcaaaccttcttga
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