Rhizobium bangladeshense: J2J98_15865
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Entry
J2J98_15865 CDS
T07228
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rban
Rhizobium bangladeshense
Pathway
rban03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rban00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J2J98_15865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rban03019
]
J2J98_15865
Enzymes [BR:
rban01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J2J98_15865
Messenger RNA biogenesis [BR:
rban03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J2J98_15865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QSY90708
LinkDB
All DBs
Position
3259719..3261467
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AA seq
582 aa
AA seq
DB search
MVRSGASRCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEQSIPLLISGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSPL
RINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVGGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQ
RERALKSFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDIKVASGEPPANISNSGPRRGNGNGNNRNRGGGQGRG
GEGRGEGRGDQNRSEHRGSRQERRPRREGEGSEIRAGGEERRERRPRPERLGRNEDFRGQ
RRGEAVPDFGPDNDLASTSDFRPAKPQRPAHNGPNGHHANGEPSGHHRGNGRHAHGRPAR
KHGEDRGQHQAQGGEPRREGNGGNRRGSSGSRNGGGQRRERA
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgctagtcgttgtggcgccccgaaaggttatgccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgccaccttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacagtccattcccctcctcatttcaggccgcgatctgatcggc
cttgcccagaccggcaccggcaagaccgccgccttcggcctgccactcattgaaaagctg
ctcgctgacgagcgccgccccgacaaccgcacgacgcggacgctgatcctggcgccgacc
cgcgagctggtgaaccagatcgccgagaacctgaagaagttcatccgcaagtcgccgctg
cgcatcaatgtggtggtcggcggcgtttcgatcaacaagcagcagctgcagctggaaaag
ggcacagacatcctggtcgccacccccggccgcctgctcgatctcgtcaaccgccgcgca
atcacgctgacgacggtgcgctatcttgtgctcgatgaggccgaccagatgctcgacctc
ggtttcgtccatgacttgcgcaagatcgccaagttggtgccgaagaagcgtcagaccatg
ctgttttcggccaccatgcccaaggccatcgccgatctcgccggcgagtatctcgtcgat
cccgtcaaagtcgaagtcacgcctcccggcaaggctgccgacaaggtcgagcaatacgtc
catttcgtcggcggcaagaacgacaagactgaactgctgcgcaagtcgctgaccgaaaac
cccgacggccgcgccatcgtcttcctgcgcaccaagcatggcgccgagaagctgatgaag
cacctcgacaatatcggctattccgtcgcctccatccacggcaacaagagccagggtcag
cgcgagcgggcgctgaagtccttccgggacggcagcatcaagacgctgatcgcgaccgac
gtcgccgcccgcggcatcgacatcccggccgtcagccacgtctacaactatgacttgccc
gaagtgccggacgcctatgtccatcgcatcggccgcacggcgcgcgccggccgcgacggc
atcgccatcgccttctgcgcacccgacgaagccaagctgctgcgcgatatcgagcgcctg
atgggcatcgacatcaaggtcgcaagcggcgagccgccggccaatatcagcaacagcggc
ccccgtcgcggcaacggcaatggcaacaaccgcaatcgcggcggcggccaaggtcgtggt
ggtgagggtcgcggcgaaggccgtggcgatcagaaccgatcggagcatcgcggcagccgc
caggaacgccgcccgcgccgagaaggcgaaggcagcgaaatccgcgccggtggcgaagaa
cgccgcgagcgccgtccgcgccccgagcgcctgggccgcaacgaggacttccgcggccag
cgtcgcggcgaagcggttccggatttcggccccgacaacgatttggcctcgacctccgat
ttccgtccggcaaagccgcagcgccctgcgcataacggccctaatggccatcacgccaat
ggcgagccgagcggccatcaccgcggcaacggccgccacgcccacggccgcccggcccgc
aagcacggcgaggaccgcggacagcatcaggcccagggcggcgaaccgcgccgcgagggc
aatggcggcaaccgccgcggcagctccggctcccgcaatggcggcggccagcgccgcgaa
cgcgcctga
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