Rhizobium bangladeshense: J2J98_25000
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Entry
J2J98_25000 CDS
T07228
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rban
Rhizobium bangladeshense
Pathway
rban03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rban00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J2J98_25000 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rban03400
]
J2J98_25000 (ligD)
Enzymes [BR:
rban01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J2J98_25000 (ligD)
DNA repair and recombination proteins [BR:
rban03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J2J98_25000 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QSY91354
LinkDB
All DBs
Position
p2:complement(235791..238439)
Genome browser
AA seq
882 aa
AA seq
DB search
MASDSLSSYRSKRDFQKTAEPSGEQRVKKSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPE
QALAKGDFKFTLEGERLQGSFVLVRMRNDRERSKRTNWLLIKHHDEFSVEENGAAILEEH
DTSVASGRSMETIAAGKGRKPKPFMVEGGKVQANAVWDSNHGLAAEERQSEAKGGRRAST
ATAVDLPDFISPQLCEKLERPPVGDAWVHEIKFDGYRIQMRVLDGEATLKTRKGLDWTAK
YPEIAEAASALPDCILDGEICALDEHGAPDFAALQAALSEGRTGSLVYFAFDLLYDGGAD
LRLNPLIKRKARLQELLAEAGDDPRIRYVEHFTGGGDAVLRSACKLSLEGIVSKQADAAY
KSGRTESWGKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFSDDHFVYVGRVGTGYGAKKVE
TLLPKLNALETATSPFTGDGAPKKQVEVVWVKPELVAEIEFEGWTADGLVRQAAFKGLRE
DKPAKEVEAEPPLRPTKAEVAEPTPRARQKLARRKGQKADVMGVLVSNPDKPLWPDENDS
GPVTKEELARYYEAVGDWMIDHIKGRPCSIIRAPDGIGGEQFFQRHAMPGQSNLLELVKV
FGDKKPYLQIDRIEGLAAVAQIAAVELHPWNCEPGQPEVPGRLVFDLDPGPDVAFSTVVA
AAREMRDRLEELGLISFCKTTGGKGLHVVTPLAVNKRKPLSWPEAKAFAHDICQQMARNK
PDLYLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTVRTVPALLSKSTAWEDYCEGQRPLEQAIKRLARTGKHAA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgacagtctatcgagctaccgatcaaaacgcgattttcagaagactgctgag
cccagcggtgagcaacgcgtcaaaaagagcaaccgccgccgctttgtcatccagaagcac
gatgcgacacgtctgcactacgacctgcggctcgagctcgacggcgtgttcaagagctgg
gctgtcaccaaaggtccatcgctcgatccgcacgacaagcgcctggcagtcgaggtcgag
gatcatccgctcgattatggcgacttcgaaggcacgattccgaaaggtcagtatggtggc
ggcacggtcatgctctgggatcgcggctactgggagccggagggacggaagagccctgag
caagcgcttgctaagggcgacttcaagttcacgctcgaaggcgaacgcctgcaggggagc
ttcgtgctggtgcgcatgcgcaacgatcgcgagcgcagcaagcggaccaactggctgttg
atcaagcatcatgacgagttttccgtggaggagaacggcgctgccatcctcgaggaacac
gacacctcggtggcgtcgggccgcagcatggaaacgatcgcagccggaaaggggcgcaag
ccaaaacccttcatggtcgaaggcggcaaggtgcaggcgaatgccgtctgggacagcaat
cacggactggccgccgaggagcggcagtcggaggcgaaaggcggacggcgcgccagcacg
gcgacagcagttgatcttccggatttcatctcaccgcagctttgcgagaagctggagcgg
ccgcccgtcggggacgcctgggtccatgagatcaaattcgacggataccgcatccagatg
cgggtgctcgatggagaggcgacgctgaagacccggaaaggtctcgactggacggccaag
taccccgaaatcgctgaagcggcgtccgcacttccagattgcattctcgacggcgaaata
tgcgctctcgatgagcacggcgcgcccgacttcgccgcccttcaagccgcgctgtcggag
ggccggaccggcagcctcgtctacttcgccttcgatctgctttatgatggcggcgcggat
ctgcgcctcaaccccctgatcaagcggaaggcgcgattgcaggagctcctcgctgaggcc
ggtgacgaccctcgcatccgctacgtcgaacattttacaggcggcggcgacgccgttctc
aggtcggcatgcaagctctcgctggaaggcatagtgtcaaagcaggcggacgccgcttat
aaatcaggtcgaacggaaagctgggggaaatcgaaatgccgggcggggcacgaggtggtc
atcggcgcctatgccaagactaacggcaaatttcgttcccttctcgtcggcgtcttcagc
gatgatcatttcgtctatgtcggccgtgtcgggaccggctacggcgccaagaaggtcgaa
acgctgcttcctaaactgaatgctctggagacggcgacatcgcctttcacaggtgacggg
gctccgaagaagcaggttgaggtcgtctgggtgaagccggagcttgtcgccgagatcgaa
ttcgagggttggaccgcggacggtctcgtccggcaggcagctttcaagggattgcgcgaa
gataagcccgccaaggaagtcgaggctgagccaccgctgcgccccactaaagctgaggtt
gcggagccgactccgagggccagacaaaaactagcgcgtcgcaagggccagaaagccgat
gtcatgggagtgctcgtttcgaacccggacaagccgttgtggccggatgagaacgacagc
ggaccggtgacgaaggaagaattggcccgctattacgaagcagttggcgactggatgatc
gaccacatcaagggcaggccctgctctatcatacgtgccccggatggaattggcggcgag
cagttctttcagcgccatgcgatgcctggacaatcgaacctgctcgaacttgtcaaggtg
ttcggcgacaagaagccatacctgcagatcgatcgcatcgaaggccttgccgccgtcgcc
cagatcgcggcggtggagctccatccatggaactgtgagcccggtcaaccggaggtgcct
ggtcgcctggtattcgacctcgatccggggcctgacgttgccttttctacagttgtcgcc
gctgcccgcgaaatgcgcgatcgactggaggagctcggactgatcagcttctgcaagacg
acgggcggtaagggcctgcatgtcgtgacgccgcttgcagtcaacaagcgcaagcccttg
tcatggccggaggcaaaggccttcgcgcatgacatctgccagcagatggcccgaaacaaa
cccgatctctacctcatcaaaatgacgaagagcctgcggggcggtcgcattttcctcgat
tacttgcgcaatgatcgcatggcgacggccgtcgctccgctctcccctcgagcccggccg
ggggcgaccgtatcaatgcctctgacctggacgcaggtgaaatcagaccttgacccgaaa
aggtttacggtgcgaaccgtgcctgccttgctatcgaagtcgacagcctgggaggactat
tgtgaggggcaacgtcccctagagcaggccatcaagaggctggcccgcaccggcaagcat
gccgcgtga
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