Rhinopithecus bieti (black snub-nosed monkey): 108540136
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Entry
108540136 CDS
T04641
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
rbb
Rhinopithecus bieti (black snub-nosed monkey)
Pathway
rbb03030
DNA replication
rbb03410
Base excision repair
rbb03420
Nucleotide excision repair
rbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108540136 (LIG1)
03410 Base excision repair
108540136 (LIG1)
03420 Nucleotide excision repair
108540136 (LIG1)
03430 Mismatch repair
108540136 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbb03032
]
108540136 (LIG1)
03400 DNA repair and recombination proteins [BR:
rbb03400
]
108540136 (LIG1)
Enzymes [BR:
rbb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108540136 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
108540136 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
108540136 (LIG1)
DNA replication proteins [BR:
rbb03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
108540136 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
108540136 (LIG1)
DNA repair and recombination proteins [BR:
rbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
108540136 (LIG1)
NER (nucleotide excision repair)
Other NER factors
108540136 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
108540136 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DUF1685
DDR
Motif
Other DBs
NCBI-GeneID:
108540136
NCBI-ProteinID:
XP_017744599
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MSGCLQRSGRGDAEAAESSEQLTGEEKCWTGRENSGANMQRSIMSFFHPKKEGKAKKPEK
EASNSSRETEPPPKAALKEWNGVVSDSDSPVKRPGRKAARVLGSEGEEEDEALSPAKGQS
CRPYKKYNASICSWASGCFQSRWTVEEEQKPVPDCSQVSPPRPATSPENSASLSDTSPMD
SSPSGIPKRRTARKQLPKRTIQEVLEEQSADEDRESKRKKEEEEVETPEESLTEAEVATE
KEGEDRDQPTTPPKPLKTSEAGTPTESVSEPEVATRQELQEEEEQTKPPRSTPKTLSSFF
TPRKPAIKKEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKLGQKVPYLAV
ARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDG
VLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIA
RLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPP
GQEFPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHC
KLSPGIPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQE
DNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQ
VQVCLYAFDLIYLNGQSLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLE
QSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA
GRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVTP
DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQ
VACLYLKQSQIQNQQGEDSGSDPEDTY
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggtgtctgcagaggagcgggcgtggggacgctgaggctgccgagagctcggag
cagctgacaggcgaagaaaagtgctggacaggaagggagaattctggcgccaacatgcag
cgaagtatcatgtcattcttccaccccaagaaagagggtaaagcgaagaagcctgagaag
gaggcatccaacagcagcagagagacggagccccctccaaaggcggcactgaaagagtgg
aatggagtggtgtctgatagtgactctccagtgaagaggccagggaggaaggcggcccgg
gtcctgggcagcgaaggggaagaggaggatgaggcccttagccctgctaaaggccagtcc
tgcaggccgtacaagaagtataacgccagcatctgctcctgggcctcaggatgcttccag
tcacggtggacggtggaggaggagcagaagcctgtcccggactgctcacaggtctccccg
ccccgtcctgccacatctcctgaaaacagcgcttccctctctgacacctctcccatggac
agctccccatcagggatcccgaagcgtcgcacagctcggaagcagctcccgaaacggacc
attcaggaagtcctggaagagcagagtgcggacgaggacagagaatccaaaaggaagaaa
gaggaggaagaggtggagaccccagaagaaagcctcacagaggctgaagtggcaacagag
aaggaaggagaagacagggaccagcctaccacacctcccaagcccctaaagacctccgaa
gcagggactccaacggaaagcgtttcggagcccgaggtggccacaaggcaggaactgcag
gaggaggaagagcagaccaagcctccccgcagcactcccaagacactcagcagcttcttc
accccccggaagccagcaatcaaaaaagaagtgaaggaggaggagccaggggctccagga
aaggagggagctgctgagggacccctggacccatctggttacaatcctgccaagaacaac
taccatcccgtggaagacgcctgctggaaactgggccagaaggtcccttacctggctgtg
gcccggacgtttgagaagatcgaggaggtgtctgcccggctccggatggtggagacgctg
agcaacttgctgcgctccgtggtggccctgtcgcctccagacctcctccctgtcctatac
ctcagcctcaaccaccttgggccaccgcagcagggcctggagcttggcgtgggtgatggc
gtccttctcaaggcagtggcccaggccacaggtcggcagctggagtctgtccgggctgag
gcagccgagaagggcgacgtggggctggtggccgagaacagccgcagcacccagaggctc
atgctgccaccacctccgctcactgcttccggggtcttcagcaagttccgtgacatcgcc
aggctcactggcagtgcttccacagccaagaagatagacatcatcaaaggcctctttgtg
gcctgccgccactcagaagcccggttcatcgccaggtccctgagcggacggctgcgcctg
gggctggcagagcagtcggtgctggctgccctctcccaggctgtgagcctcacgccccca
ggccaagaattcccaccagccgtggtggatgctgggaagggcaagacagcagaggccaga
aagacatggctggaggagcaaggcatgatcctgaagcagacgttctgcgaggtgcccgac
ctggaccgaattatccccgtgctgctggagcacggcctggaacgtctcccagagcactgc
aagctgagcccagggattcccctgaaaccaatgttggcccatcccacgcggggcgtcagc
gaggttctgaaacgctttgaggaggcagctttcacctgcgaatacaaatacgatgggcag
agggcacagatccacgccctggaaggcggggaggtgaagatcttcagcaggaatcaggaa
gacaacactggaaagtacccggacatcatcagccgcatccccaagattaaactcccatcg
gtcacatccttcatcctggacaccgaagccgtggcttgggaccgggaaaagaagcagatc
cagccattccaagtgctcaccacccgcaaacgcaaggaagtggatgcgtccgagatccag
gtgcaggtgtgtttgtacgccttcgacctcatctacctcaatggacagtccctggtacgt
gagcccctttcccggcgccggcagctgctccgggagaactttgtggagacggagggcgag
tttgtcttcgccacctctctggacaccaaggacgtcgagcagatcgccgagttcctggag
cagtcggtgaaagactcctgcgaggggctgatggtgaagaccctggatgtcgatgccacc
tacgagatcgccaagagatcgcacaactggctcaagctgaagaaggactaccttgatggc
gtgggtgacaccctggacctggtggtgatcggcgcctacctgggccgggggaagcgggcc
ggccggtacgggggcttcctgctggcctcctacgacgaggacagtgaggagctgcaggcc
atatgcaagcttggaactggcttcagcgacgaggagctggaggagcatcaccagagcctc
aaggccctggtgctgcccagcccccgcccttatgtgcggatagatggtgccgtgactccg
gaccactggctggaccccagtgctgtgtgggaggtgaagtgtgccgacctctccctctct
cccatctaccctgctgcgcggggcctggtggatagtgacaaggggatctcccttcgcttc
cctcggtttattcgagtccgtgaagacaagcagccggagcaggccaccaccagtgcacag
gtggcctgtttgtacctgaagcaaagtcagattcagaaccaacaaggcgaggactcaggc
tctgaccctgaagatacctactaa
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