Aerosticca soli: ALSL_1249
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Entry
ALSL_1249 CDS
T06043
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rbd
Aerosticca soli
Pathway
rbd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ALSL_1249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbd03400
]
ALSL_1249
Enzymes [BR:
rbd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ALSL_1249
DNA repair and recombination proteins [BR:
rbd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ALSL_1249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Cas3_C
FCP1_C
Motif
Other DBs
NCBI-ProteinID:
BBD79907
UniProt:
A0A2Z6E4L8
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All DBs
Position
complement(1326505..1328133)
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AA seq
542 aa
AA seq
DB search
MSLREYRRKRHFDQTPEPAGKVAARRHRDPIFVIQLHHASHRHYDFRLELDGVLKSWAVP
KGPSLRPGEKRLAVQVEDHPLDYATFEGDIPAGHYGAGHVAIFDHGTWHCEGDPHRQLAE
GKLVFTLDGEKLHGEWALVRTAMRGRQPQWLLIKHDDAYAADMEADDFLDEDATDERKST
AKRPTKRTAKHAAAAPPTRRAATKRARKSTATDWQASARALPGARAGMPFGFAPALTMLR
PAPPSGEDWLHEIKWDGYRLLVDLENGKARLRSRADLDWTATFPEVARAIEALPVADACL
DGELVALDDAGRSDFPALQHAIEQRATADLRYMLFDLPGLAGMDLRGCPLHERKRLLAEL
VAAAGEGPLGYSEHLVGHGQELFAETRRQGLEGVVSKRIDSTYRSGRSGDWLKAKHAHTD
EFVIVGYTPPKGSRTGFGSLLLAARDEKGGWRYVGRVGTGFDQATLDSLQRRLEALARKT
PTVALPAKLPFPTRSVQWVTPRLVAEVDFRGWTRDRLLRQASFLRLREDKPADQLEPPEE
IG
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcgcgagtaccggcgcaagcggcatttcgaccagacgcccgaacctgcgggc
aaggtggctgcgcgccggcaccgcgacccgatcttcgtgatccagctgcatcatgccagc
caccggcattacgacttccgcctggaactggacggcgtgctcaagagctgggcggtgccg
aaggggccttcgctgcggcccggcgagaaacgcctggccgtgcaggtggaggatcacccc
ctcgactacgccactttcgaaggcgacataccggccggccattacggcgccggtcacgtg
gcgatcttcgaccacggcacctggcattgcgaaggcgatccgcaccggcagctggccgag
ggcaagctggtcttcaccctcgatggcgaaaaactgcacggcgaatgggcgctggtgcgc
accgccatgcgtggacgccagccgcaatggctgctgatcaagcacgacgacgcctacgcc
gcggacatggaggcggacgacttcctcgacgaggacgctaccgacgagcgcaagtcgacc
gcgaaacgccccacgaagcgcacggccaagcacgccgcagcggctccgccgacccgccgc
gccgccaccaagcgcgcacgcaaatcgaccgccaccgattggcaggccagcgcacgagca
ctgcccggcgcgcgtgcgggcatgccgttcggtttcgctcccgcgctgaccatgctgcgg
ccggccccgccgagcggcgaagactggctgcacgagatcaagtgggacggctatcgcctg
ctggtcgacctcgaaaacggcaaggccaggctgcgttcgcgcgctgacctcgactggacc
gccacctttcccgaagtcgcccgcgcgatcgaggcgctgccggtcgccgacgcctgcctg
gacggcgagctggtcgccttggacgatgcggggcgcagcgattttcccgccctgcagcac
gccatcgaacagcgcgccacagccgatctgcgctacatgctgttcgacctgccgggactg
gccggcatggacctgcggggctgcccgttgcacgagcgcaagcgcctcctggccgagctt
gtcgcagccgccggcgaagggcctctcggctacagcgagcacctcgtcggccatggccag
gagctgtttgccgaaacccgccggcagggcctggaaggggtggtcagcaaacgcatcgac
agcacctaccgcagcggccgcagtggcgactggctcaaggccaaacacgcgcacaccgac
gaattcgtcatcgtcggctacacgccgccgaagggctcgcgcaccggtttcggctcgctg
ctgctggccgcgcgtgacgagaaaggcggctggcgctatgtcggccgggtcggcaccggc
ttcgaccaggccacgctcgacagcctgcagcgccggctcgaggcgctcgcgcgcaagacg
ccgacggtcgcgctgccggccaagctgcccttcccgacgcgcagcgtgcaatgggtgacc
ccgcgcctggtggcggaggtggacttccgcggctggacgcgcgaccggctgctgcgccag
gcgagctttctgcgcctgcgcgaggacaaacccgccgaccagctcgaaccccccgaggaa
atcggctga
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