Aerosticca soli: ALSL_1396
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Entry
ALSL_1396 CDS
T06043
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rbd
Aerosticca soli
Pathway
rbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALSL_1396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbd03019
]
ALSL_1396
03009 Ribosome biogenesis [BR:
rbd03009
]
ALSL_1396
Enzymes [BR:
rbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ALSL_1396
Messenger RNA biogenesis [BR:
rbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALSL_1396
Ribosome biogenesis [BR:
rbd03009
]
Prokaryotic type
rRNA helicases
ALSL_1396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
adh_short
UvrA_inter
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBD80053
UniProt:
A0A2Z6E4U8
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All DBs
Position
1471029..1472840
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AA seq
603 aa
AA seq
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MTSPASDSSLASAGFAAFGLKPALLQALAEVGYESPSPIQAATLPPLLAGRDVLGQAQTG
TGKTAAFALPILSRIDLDTRKPQALVLAPTRELAIQVAEAFQRYAAHLSGLQVLPIYGGQ
SYGPQLNALRRGVQVVVGTPGRVIDHLERGTLDLAELKFVVLDEADEMLRMGFVDDVEKV
LEATPPNRQVALFSATMPAPIRKIAQRHLKDPVEVAIKAATATATNIRQRYWWVSGVHKL
DAMTRILEAEPFDAMIVFARTKQATEELAEKLAARGFAAAAINGDMAQPQRERVIQQLRE
GKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPRE
KGMLRAIERATRQPIEEMKLPTVEAVNDQRIARFKQRISDTLAAGGLELFQRLVEEYEQE
HDVPALEIAAALARIAQGRQPLLLDPPPRREPRDTAAHGEETEAHGRRDRPSREPSRREA
ARPARPHVTEAGKRTYRIEVGHRHGVKPGNIIGAIANEAGLESQHIGRLSIREDYSLIDL
PEGMPKEIFEHLRKVWVSQQQLRISAWDGEDESGGTRPPRKAGPARQGEGRSRKPGRKPP
SRR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgacttcccctgcttccgactcatccctggccagcgccgggttcgccgcgttcggcctg
aagcctgcgctgctgcaggcactggcggaggtcggctatgaatcgccctcgccgatccag
gccgccaccctaccgcccctgctggcgggacgcgacgtgctcggccaggcgcagaccggc
accggcaagaccgccgccttcgccctgcccatcctttcgcgcatcgacctcgacacgcgc
aagccgcaagcgctggtgctcgcgccgacccgcgagctcgccatccaggtcgccgaggcc
tttcagcgctacgccgcgcatctgtccgggctgcaggtgctgccgatctacggcggtcag
agttacggcccccagctcaacgcgctgcgtcgcggcgtgcaggtggtggtgggcacgccg
ggccgggtgatcgaccacctcgagcgcggcacgctggacctggccgagctcaagttcgtg
gtgctcgacgaagccgatgaaatgctgcgcatgggcttcgtcgacgacgtcgagaaagtg
ctggaggcgaccccgccgaaccgccaggtggcgctgttttccgccaccatgccggcgccg
atccgcaagatcgcgcagaggcacctgaaggatccggtggaggtggcgatcaaggccgcc
accgccaccgccaccaacatccgccagcgctactggtgggtgagcggcgtgcacaagctc
gacgcgatgacgcgcatcctcgaggccgaacccttcgacgccatgatcgtgttcgcgcgc
accaagcaggccaccgaggaactggccgagaaactcgccgcgcgcgggttcgcggccgcc
gcgatcaacggcgacatggcccagccgcagcgcgagcgggtgatccagcaactgcgcgaa
ggcaagctcgacatcctggtcgccaccgacgtcgcggcccgcgggctggacgtggagcgc
gtcagccatgtgctcaactacgacatcccctacgacaccgaaagctacgtgcaccgcatc
ggccgcaccggccgcgcgggccgcagcggcgaggcgatcctgttcgtcaccccgcgcgag
aagggcatgctgcgcgcgatcgagcgcgccacccgccagccgatcgaggagatgaaactg
ccgaccgtggaagcggtgaacgatcagcgcatcgcccgtttcaagcagcgcatcagcgac
accctggccgccggcggcctggagctgttccagcgcctggtcgaggaatacgaacaggag
cacgacgtgccggccctggagatcgccgccgcgttggcgcgcatcgcccagggccgccag
ccgctgttgctcgatccgccgccgcggcgcgaaccgcgcgacaccgccgcgcacggcgaa
gagacggaagcgcacggccggcgcgaccgcccttcacgcgagccgtctcggcgtgaggcg
gcgcgcccggctcggccgcacgtcaccgaggcgggcaagcgcacctaccggatcgaggtc
ggccatcggcacggcgtcaagcccggcaatatcatcggcgcgatcgccaacgaggccggg
ctggaaagccagcacatcggccgcctcagcatccgcgaggattacagcctgatcgacctg
cccgaaggcatgcccaaggagatcttcgagcatctgcgtaaggtctgggtgagccagcag
caactgcgcatcagtgcctgggatggcgaggacgagagcggcggcacgcggccgccgcgc
aaggcagggccggcacggcagggcgagggtcgttcgcgcaagcccggcaggaagccgccg
tcgcggcgctga
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