Rhizobiales bacterium NRL2: TEF_05945
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Entry
TEF_05945 CDS
T04419
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
rbm
Rhizobiales bacterium NRL2
Pathway
rbm00470
D-Amino acid metabolism
rbm00550
Peptidoglycan biosynthesis
rbm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rbm00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
TEF_05945 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
TEF_05945 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rbm01011
]
TEF_05945 (murD)
Enzymes [BR:
rbm01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
TEF_05945 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
rbm01011
]
Precursor biosynthesis
Amino acid ligase
TEF_05945 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
2-Hacid_dh_C
AlaDh_PNT_C
ADH_zinc_N
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
ANK80384
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All DBs
Position
1293669..1295045
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AA seq
458 aa
AA seq
DB search
MIALRGMEGKRIAVLGLGKSGLATVRAARAGGAEVVAWDDSAERRAALKDAPVEALERID
WAAVDMLVPAPGIPLTHPEPHPAIRAATASGVEIAGDIELFVRACPEARVIGVTGTNGKS
TTTALIGHVLSACGVDAAVGGNIGTAVLDLQPPKPEQVCVLELSSYQLDLTESLKPKVSV
LLNITPDHLDRHGGMAGYVAAKERLFARVGQGDTAVIGVDDDFGADLAQRLADRHDVHVV
PVAVGRPLADGVYVLKGQLFDGGLKVMDLAAARALPGAHNHQNAAAAYAACRAIGCRTAD
IARAIASFPGLPHRIERIGEREGITFYNDSKATNAEAAARALGAFAGIYWIAGGKPKQGG
LGPLYPFLERVRRAYLIGEAEAAFADELEGRVETRRCGTLAAAVETAWSDARQAGSGVVL
LSPACASFDQFPNFEARGDAFRAVASFIIERSDAEGAS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcattgagggggatggaggggaaacggatcgcggtcctgggcctcggcaagagc
ggccttgccactgtccgcgccgcccgcgccggcggcgccgaggtcgtcgcctgggacgac
agcgccgaacgccgcgccgcgctgaaggacgccccggttgaagcgctcgagcgtatcgac
tgggccgccgtcgacatgctggtgcccgcgccgggcataccgctgacccatcccgagccg
catccggcgatccgcgcggccacggcctccggcgtcgagatcgccggcgacatcgagctt
ttcgtccgcgcctgtcccgaggcgcgtgttatcggtgtgaccggcaccaacggcaagtcc
acgacaacggcgctgatcggccatgtcctgagcgcctgcggcgtcgacgccgcggtcggc
ggcaatatcggcaccgccgtgctcgacctgcagccgccgaagccggagcaggtctgcgtc
ctggagctctcctcctatcagctcgacctcactgaatcgctcaagccgaaggtgagcgtg
ctgctcaacatcacccccgaccatctggaccggcatggcggcatggccggctatgtcgcg
gcgaaggagcggctgttcgcccgggtcggccagggcgacacggcggtgatcggcgtcgac
gacgacttcggcgcggatctggcgcagcgcctcgccgaccgccacgacgtccatgtcgtg
cccgtcgccgtcggccggccgctggccgatggggtctatgtcctgaagggccagctcttc
gatggcgggctgaaggtcatggaccttgcggcggccagggcgctgccgggcgcgcacaat
caccagaatgccgccgccgcctacgcagcctgccgcgccatcggctgccggaccgccgat
atcgcccgcgccatcgcgagctttcccggtctgccgcaccggatcgaacgcatcggcgag
cgcgagggcataaccttctacaacgactccaaggccaccaacgccgaggccgcggcccgg
gcgctgggcgccttcgccggcatctactggatcgccgggggcaagccgaagcagggcgga
ctgggcccgctttacccgttcctcgagcgggtgcgccgcgcctatctgatcggcgaggct
gaagccgcctttgcggacgagctggagggccgcgtcgagacccggcgctgcggtacgctg
gccgcggcggtcgagaccgcctggtccgacgcccggcaggccggttccggcgtggtgctg
ttgtcgcctgcctgcgccagcttcgaccagttcccgaacttcgaggcgcgcggcgacgca
ttccgcgccgtggcgtccttcatcatcgaacggtcggacgcggagggcgcgtcatga
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