Rhodobiaceae bacterium SMS8: RHODOSMS8_01941
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Entry
RHODOSMS8_01941 CDS
T05596
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rbs
Rhodobiaceae bacterium SMS8
Pathway
rbs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rbs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RHODOSMS8_01941 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbs03021
]
RHODOSMS8_01941 (rpoD)
Transcription machinery [BR:
rbs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RHODOSMS8_01941 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
Motif
Other DBs
NCBI-ProteinID:
AWZ01471
UniProt:
A0A2Z4UKK4
LinkDB
All DBs
Position
complement(1958601..1960592)
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AA seq
663 aa
AA seq
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MATKTAEAEPAEAATEERDGPLLDMSDAGVKKLIKAAKARGFVTYDELNKVLPSEEFSSE
QIEDTMSMLSEMGITVIENDEAETDDKDDKKDEPAAEGTAVAEAGPAPGAVTKAASSSTT
TLERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLSFQAIIIWRD
ELNEGNILLRDIIDLDATYAGPDAKKVDKSQAALDKERAKAEGKVIEEEPEEEEEDDEAE
NNLSLAAMEAELKPKVLEIFDAVASDYKKLRRLQDQKHELALQTEELSTSQERRYKKLKE
DVIQEVKSLALNNNRIDSLVDQLYQINKRLMGLEGRLMRAAEAHGVSREDFLQQYYQNEL
DPNWMRRVGRLKGKGWADFTKNDKETIKEIRDEIQELAQETGLDIAEYRRIVHTVQKGER
EARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
ATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELSVKLGMP
LEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLAS
LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSF
LDN
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaagacggcagaagcagaaccagcagaagcggcgacagaagaacgggacggc
ccgttgctcgacatgtcggatgcgggcgtaaagaaactcatcaaggcggcaaaggcgcgt
ggctttgttacctatgatgaattgaacaaagttctgccgtctgaagagttcagctccgaa
cagatcgaagacacgatgtcgatgctctctgaaatgggcatcaccgtcatcgagaatgac
gaagccgaaaccgacgataaagacgataaaaaagacgagcctgctgcagaaggtacggct
gttgcggaagccggcccggcacctggcgctgtcaccaaagcggcatcctcctcaacaaca
acccttgagcgcacagacgatcccgtccgcatgtatctgcgtgagatgggatctgttgag
cttctgtcgcgcgaaggcgaaatcgctatcgccaagcgtattgaagctggccgtgagacc
atgattgcgggtctttgcgaaagcccgctgagcttccaggcgatcattatctggcgcgat
gagttgaatgaaggaaacattctgctgcgcgacattatcgatctggacgctacttatgcg
ggtccggatgccaagaaggtcgataagagccaggcagcgctcgacaaggaacgcgccaag
gctgaaggcaaggtaatcgaagaagagccggaagaagaggaagaggacgacgaagcagag
aacaatctctcgctcgccgccatggaggctgagcttaagccgaaagtcctcgaaatcttt
gatgcggttgccagtgactataagaagctgcgtcgcctgcaggaccagaagcacgaactg
gcgttgcagactgaagagctctcaacgtcgcaggagcgtcgttacaagaagctcaaagaa
gatgtgatccaggaagtgaagagcctcgcgctcaacaataatcgtatcgacagcctggtg
gaccagctctatcagatcaacaagcgcctcatgggccttgaaggtcgtttgatgcgcgct
gctgaagcgcatggtgtttcgcgggaagacttcctgcagcagtattatcaaaacgagctc
gacccgaactggatgcgccgcgtaggccgcctgaaaggcaaaggctgggccgactttacg
aagaacgataaagagacgatcaaagaaattcgcgacgagatccaggagcttgctcaggaa
accggtctcgacattgctgaatatcgccgcatcgtgcatacagtgcagaaaggcgagcgc
gaagcgcgcattgccaagaaggaaatggttgaagccaaccttcgtctcgtgatttccatt
gcgaaaaaatacacaaaccgtggcctgcagttcctcgacttgatccaggaaggcaatatc
ggcctgatgaaagcggttgataagtttgaatatcgccgtggctacaagttctcgacctat
gcgacctggtggatccgccaggcgattacgcgctcgattgctgaccaggcacgaaccatt
cgtattccggttcacatgatcgaaacgatcaacaaactcgttcggacatcacgtcagatg
ctgcatgagattggccgtgagccgaccccggaagaattgtctgtgaagcttggcatgccg
ctggaaaaagtgcgcaaggttctgaagattgccaaagagccgatctcgcttgagacgccg
attggtgatgaagaagacagccatctgggcgatttcattgaagacaagaatgcgattctg
ccaattgatgcagcgatccagtccaaccttcgtgaaacaacgacccgggttctggcctct
ctcacaccgcgtgaagagcgggttctgcggatgcgctttggcatcggcatgaacacggac
catacgctggaagaagtggggcagcagttctctgtgacccgtgagcgtatccgtcagatt
gaagcgaaggcgctgcggaagctcaagcatcctagccggtcgcggaaactgcggagcttc
ctggacaactaa
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