Rugosibacter aromaticivorans: PG1C_04525
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Entry
PG1C_04525 CDS
T03689
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rbu
Rugosibacter aromaticivorans
Pathway
rbu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PG1C_04525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbu03400
]
PG1C_04525
Enzymes [BR:
rbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PG1C_04525
DNA repair and recombination proteins [BR:
rbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PG1C_04525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
AAA_22
AAA_16
ERCC3_RAD25_C
AAA_30
DUF3638
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJP47932
UniProt:
A0A0C5IYV0
LinkDB
All DBs
Position
complement(910478..913954)
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AA seq
1158 aa
AA seq
DB search
MVFALNSLLSLPAQPKPGQRLDLPSFSASIDALAMAQLARPGHLLTIITASPLEAQRLVE
EIAWFAPHLRVHLLPDWETLPYDHFSPHQDLVSERLATLHAVACSECDVLITAASTAISR
LAPPSFLAGHTFFMKKGERLDIDKLRAQLTLAGYQHVTQVVAAGEYSVRGGLIDLFPMGT
PLPYRIELFDDEIDTLRSFDVDSQRTLYPVPEIRLLPAREFPAGDVGRTIFRQRFRETFE
GDASRISLYKDVSNGILPAGIEYYLPLFFDTTATLFDYLPAEALLILHGDVAGAIAEFWT
DTAGRYKMLGGDRSRPVLPPQQLFLRDEEFFTAANAWSQWTLKIPAGNAKVVQSKHRAGA
GDTVQSANHALPLLAVERKADDPIAHLRRFLTNQPRRVLLLTESPGRRETLHDYLGMHQL
NPTACADFAEFLASENPLMLGVGPLSGGFLLDEFALITENELYAATARPRSRRSEARRAN
LEGWLRDLSELKVGDPVVHEQHGIGRYLGLVHMDFGEGNTEFLHLEYADSAKLYVPVAQL
HVITRYSGADPESIHLHTLGSGQWEKAKKKAAEQVHDTAVELLHLYAQRATREGHRFTCN
MHDLEAFADGFGFEETPDQLTAIQAVIADMTSGKPMDRLVCGDVGFGKTEVAMRAAFIAV
ADGKQVAVLCPTTLLAEQHYQNFADRFASLAVKVAEISRFKNAKEQAEAIELVAQGKIDI
LIGTHRLLQKDVAFARLGLIIIDEEHRFGVRQKESLKALRAQVDVLTLTATPIPRTLGLS
LDGLRDFSVIATPPQKRLAIKTFVSKWSTGQIREACLREFKRGGQVYFLHNEVDTIENMR
DRLQTLLPEARIIIGHGQLPERELERVMREFTQQKHNLLLCSTIIETGIDNPHANTIIIN
RADKFGLAQLHQLRGRVGRSHHQAYAYLLTHEDAKPSPQAQRRLDAICAMEELGSGFFLA
MHDLEIRGAGEVLGENQSGEIHEIGFAMYTNMLNAAVTALKAGKDVPDLTLPLALTAEIN
LHTPALLTQDYCPDVHERLMLYKRLANCENDDELRLLQEELIDRYGALPHQSLALLETHR
IRLAARALGIKKVDAGPAAIQLQFVPNPPIDPAKIIQLIQKERTIKLAGQDKLSWQKSTA
TLQERVSALRELFAKLTH
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgccttgaattctctgctgtcactacccgcgcaacccaagccgggccaacgc
ctcgatttgccgtcattttccgcatccatcgatgccctcgccatggcgcagcttgcccgc
ccggggcatctgctgacgattatcacggcaagcccgttggaagcgcagcggctggttgaa
gaaattgcgtggtttgcaccccatctgcgtgtccatcttttaccggattgggaaaccctg
ccgtatgaccatttttcgccgcaccaggatctggtctcagaacgcctggccacgttgcac
gccgtcgcatgcagcgaatgcgatgtcctcattactgccgcatccaccgcaatctcccga
ctggcaccgccgtcatttttagccggacatacttttttcatgaaaaaaggcgagcgcctg
gatatcgacaaactacgcgcccagctcactctggccggctaccaacacgtcacgcaagtg
gttgcagccggtgaatacagcgtgcgtggcggattgatcgatctcttcccgatgggcaca
ccgttgccttatcgcatcgaattgttcgatgatgaaatcgataccttgcgcagctttgac
gttgactcacagcgcaccttgtatcccgtccctgaaattcgcctgctgcccgcgcgggaa
tttcccgcaggggatgttggccgcaccatctttcgccagcgcttccgcgaaacctttgaa
ggagatgcttcgcgcatcagcctgtataaagatgtctcaaatggcattttgccagcgggc
attgaatactacctgccgctgttttttgataccaccgccaccctgttcgactatctgccc
gccgaggcgctgctgattttgcatggcgatgtggccggtgctattgccgaattctggacc
gatactgccggacgctacaaaatgctgggtggcgaccgcagccgcccggtgttgcccccg
caacagctatttttacgcgacgaagaattttttactgccgccaacgcctggtcacaatgg
acgctaaaaattcccgcaggcaacgcaaaggtagtgcagagcaagcaccgcgctggcgct
ggtgacacggtgcaaagcgcaaaccatgcgctgccgctactcgccgttgaacgtaaagcg
gatgacccaatcgctcacctgcgccgctttctcaccaatcaaccgcgccgtgtgctgctg
ctgaccgagtcacccggccgtcgtgaaacgctgcacgactatcttggcatgcaccaactt
aaccctaccgcctgcgctgatttcgccgagtttttagccagcgaaaacccgctgatgctg
ggcgttggtccgctctcgggtggcttcttgcttgatgagtttgccctcatcactgaaaac
gaactctatgccgccaccgcacggccacgcagtcgccgcagcgaagcgcggcgtgccaat
ctcgaaggctggctgcgcgacctctccgagctcaaggtgggcgacccggtggtgcatgag
cagcatggcatcggccgctatcttggccttgtccatatggattttggcgaaggcaatacg
gaattcctgcatcttgaatatgccgatagtgccaagctgtacgtacccgttgcccaattg
catgtcattactcgctacagcggcgctgatccggaatccattcatctgcacaccctaggc
tccggccagtgggaaaaagctaaaaagaaagccgccgaacaagtgcatgacaccgcagtt
gaactgctccatctgtatgcccagcgtgccacgcgcgaagggcatcgtttcacctgcaat
atgcacgatctggaagccttcgccgatggcttcgggtttgaagaaacacccgatcagcta
actgctattcaggcggtgatcgccgatatgacatcaggaaaaccaatggatcggctagtc
tgtggagatgtcggctttggcaaaacagaagtcgccatgcgcgcagccttcatcgctgtg
gccgacggcaagcaggtggccgtgctttgcccgaccacgctgcttgccgaacaacattat
caaaatttcgcggaccgctttgccagcctggctgtcaaggtcgccgaaatctcccgcttc
aagaatgccaaagagcaagccgaggcaattgaactggtggcacaaggaaagattgatatt
ctgattggcacgcatcgcctgctgcaaaaagatgtcgctttcgctcgcctcggcctcatc
atcatcgatgaagaacaccgctttggcgtgcgccaaaaagaatcgctcaaggcgctccgt
gcacaagtggatgtactcaccctgaccgccacgcccattccgcgcacgctcggcttatcg
ctcgatggcctgcgcgacttttcagtgatcgccaccccaccgcaaaaacgcctggcgatt
aaaacttttgtcagcaaatggtccaccggccagatacgcgaggcctgcttacgggaattc
aaacgcggcggccaggtgtattttttgcacaacgaagtagataccattgaaaacatgcgc
gaccgtttgcaaacccttctgcccgaagcgcgtatcatcattggccatggccagttgccc
gagagagaactcgagcgcgtgatgcgtgaattcacgcagcaaaaacacaacctgctgctg
tgctcgaccatcattgaaaccggcatcgacaacccgcatgccaacaccatcatcatcaat
cgcgcagataaatttggcctggcgcaactgcaccaattacgcgggcgtgtgggccgctcg
caccatcaggcttacgcgtatctgctcacgcacgaagatgccaagcccagcccgcaggca
caacgccggctggatgccatttgcgccatggaagaacttggctcaggcttttttctcgcc
atgcatgatctggaaattcgcggcgcgggcgaagtgctgggcgaaaaccaaagcggcgag
attcacgaaattggttttgcgatgtacaccaacatgctcaatgccgccgtcaccgcatta
aaagcgggcaaagatgttcctgatcttaccttgccgctagcactcaccgctgaaatcaat
ttgcacacgcccgccctcctcacccaggattattgcccggacgtgcatgaacgattaatg
ctttataagcgtctggccaactgcgaaaacgacgatgagttgcgcttgttgcaagaggag
ctcatcgaccgttatggtgccttgcctcaccaatcactcgcgctgctggagacccatcgc
attcgactggctgcgcgcgcactggggatcaagaaagtggatgccggccctgccgcgata
caattgcaattcgttcccaacccgccgattgacccggcaaaaatcattcagctgattcaa
aaagaacgcaccatcaaactcgcgggccaggacaaactctcctggcaaaaaagcaccgcc
acactgcaagaacgtgtctccgccttacgcgaattatttgccaagctgactcactaa
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