Rhizobium brockwellii: RLCC275e_24395
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Entry
RLCC275e_24395 CDS
T09359
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rbw
Rhizobium brockwellii
Pathway
rbw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RLCC275e_24395 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbw03400
]
RLCC275e_24395 (ligD)
Enzymes [BR:
rbw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RLCC275e_24395 (ligD)
DNA repair and recombination proteins [BR:
rbw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RLCC275e_24395 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
QJX08148
UniProt:
A0A6M5ZP90
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All DBs
Position
pRltCC275eF:complement(125126..127771)
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AA seq
881 aa
AA seq
DB search
MASDKLSTYRSKRDFQKTAEPSGDTQLARSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKSPE
QALAKGDFKFTLEGKRLHGSFVLVRMRNDRNGGNRTNWLLIKHHDEFSVENNGEAILEKN
DTSVASGRTMEMIAAGKGRKPKPFMVEGGDVQADAVWDSNHGLAAEERKENAGGGRKSKP
ATKVDLPDFIAPQLCQTLERPPAGTGWIHEIKFDGYRIQMRVLDGEATLKTRKGLDWTAK
YPEIAQAASTLPDAIIDGEICALDDHGVPDFAALQAALSEGKTGELVYFAFDLLYEGGDD
LRSLPLVERKTRLQSLLSDAGDDPRIRFVEHFDTGGDAVLRSACKLSLEGIVSKEADAPY
QSGRTESWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAKKVE
TLLPKLKALETAKSPFTGIGAPKKEAEVTWLKPKLVAEIEFAGWTADGIVRQAAFKGLRD
DKPAKEVKAERPAKPAQTDVPQPAMEAKARPVRKKGAKAEVMGVLISNPDKPLWPDANDG
KPVSKEELARYYEAVGSWLIEHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCEPHQPEVPGRLVFDLDPGPDVPFSAVVS
AAREMRDRLDALGLISFCKTTGGKGLHVVTPLAVNKRKPLSWAEAKSFAHDVCQQMARDN
PDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARSGATVSMPLTWTQVKSDLDPK
RFTIRTVPTLLSKSTAWEDYGDGKRPLEQAIKRRGKASKAA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgacaaactatcgacctatcggtcgaagcgcgactttcaaaagacggcggag
ccgagcggcgatacgcagctcgcccgcagcaatcgccgtcgcttcgtgatccagaaacat
gatgccacccggctgcactacgacctgcggctcgagctggatggcgtcttcaaatcctgg
gcggtcaccaaaggcccgtctctcgacccgcacgacaagcgactggcagttgaggtcgag
gatcatccgctcgactatggcgacttcgaaggcaccattccgaaaggtcagtatggcggc
gggacggtcatgctctgggatcggggctattgggaaccggaaggaaataagagccccgag
caggccctcgccaagggtgacttcaagttcaccttggaaggcaaacgcctgcacggcagc
ttcgtgctggtgcgcatgcgcaatgatcgcaacggcggcaaccggacaaattggctgctc
atcaaacaccatgatgagttctctgtcgaaaataatggcgaagcgatcctcgagaagaac
gacacctctgtcgcctccggccgaaccatggaaatgattgccgccggcaagggacgaaag
cccaagcctttcatggtcgagggtggcgacgttcaggctgatgccgtctgggacagcaat
cacggactggctgccgaagagcgaaaagagaacgccggaggcggtcggaaatcgaaaccg
gccacaaaagtcgatctgccggatttcattgcgccgcagctctgccagaccctggaacgc
cctccggccggcaccggctggattcacgagatcaagttcgacggttaccggatccagatg
cgggtgctggatggtgaggcgacgctgaagaccaggaaagggctcgactggacggccaaa
tatcccgagatcgcccaggcggcatcgacactgcccgatgcgatcatcgacggcgagatc
tgcgccctcgacgatcatggcgttcctgatttcgcggccctgcaggcggccctttcggaa
ggcaagaccggcgaactcgtctatttcgccttcgatcttctctacgagggtggcgacgac
ctgcgatctctgccgctcgtcgagcgcaagacgcggcttcaaagccttctgtccgacgcc
ggcgatgatccgcgcatccgtttcgtcgagcatttcgacaccggcggtgatgcagttctc
cggtctgcctgcaaactctcgctggaaggcatcgtctcgaaagaggcggatgcaccctat
caatccggccgtaccgaaagctgggcgaagtcgaaatgccgcgccggccacgaggtggtg
atcggcgcctatgccaagaccaacgggaaattccgatccctgctggtcggcgtctaccgc
ggcgaccacttcgtctatgtcggccgcgtcggcacaggatatggcgcgaagaaggttgaa
acgctgcttccgaagttgaaagcgctcgagacggcaaagtcgccgttcaccggcatcggc
gcgccgaagaaggaggccgaggtcacctggctgaagcccaagctcgtggcggaaatcgaa
ttcgcgggctggaccgccgacggtattgtccggcaggcggccttcaagggattgcgggac
gacaagccggccaaagaagtcaaggccgaacggccggcaaagcccgcgcaaactgacgtg
ccgcagccggccatggaggcgaaggctagacccgtccgcaaaaaaggcgccaaggcggag
gtcatgggggtgctgatctcaaacccggacaagccgctgtggccggatgccaatgacggc
aaacctgtcagcaaggaagagctggcccgttactacgaagccgtcggctcctggctgatc
gagcacatcaagggacggccatgttccatcatccgcgcgcccgacgggatcggcggcgag
cagtttttccagcgccatgcgatgcccggcacctcgaaccttctcgaactggtcaaggtt
ttcggcgataaaaagccctatctgcaaatcgaccgggtcgaaggcttggctgccgtcgcc
caaatcggcgccgtcgagctgcacccctggaattgcgaaccgcatcagcctgaggtgccc
ggccggctcgtcttcgaccttgatccaggtccggacgtgccattctccgcggtcgtttcg
gcagcccgcgaaatgcgggaccgtctcgacgcgctgggtctgatcagcttttgcaagacg
actggcggcaagggtctgcatgtcgtcacgccactcgcagtcaacaagcgcaagccgctt
tcgtgggcggaagcgaagagcttcgcacacgacgtctgccagcagatggcgcgcgacaat
cccgatctctatctgatcaagatgacgaagagcctgaggaacggccggatcttcctcgac
tatctgcgcaatgaccgcatggcgacggccgtggcgcctttgtcaccgcgcgcccgatcg
ggagccaccgtctccatgccgctgacttggacgcaggtcaaatcagatctggaccccaag
cgcttcactatccgcaccgttccgaccctgctgtcgaagtccactgcctgggaagattac
ggcgatggcaagcgtccgctggagcaagcgatcaaacggcgcggcaaggcttccaaggcg
gcttga
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