Rhodobacterales bacterium HKCCA1288: I3V23_02740
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Entry
I3V23_02740 CDS
T09602
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rbx
Rhodobacterales bacterium HKCCA1288
Pathway
rbx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I3V23_02740 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbx03400
]
I3V23_02740 (mfd)
Enzymes [BR:
rbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I3V23_02740 (mfd)
DNA repair and recombination proteins [BR:
rbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I3V23_02740 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_16
MFD_D3
AAA_30
SecA_DEAD
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QPI85924
UniProt:
A0A7S9ZBZ5
LinkDB
All DBs
Position
complement(548153..551608)
Genome browser
AA seq
1151 aa
AA seq
DB search
MSHAKPQPAHIRASGVPEGYDAQMILRELERAGSDETMVLHIARDDKRAESIAAALQFFA
PDLTLLRFPGWDCLPYDRISPNAEISARRMATLARLVQGGVGPAVVLTTLNAATQFLPPR
DLLREAAFHATVGQRIDEDALRAFLVRMGFTQTPTVTEAGDYALRGGIIDIWPAGTPQPY
RLDLFGDVLDGLRSFDPVTQRSLETLTHLSLSPVSEVVMDEAAITRFRQNYRIEFGAAGN
DDPLYEAVSAGRKYQGVEHWLPYFHPKLETLFDYLPDAVVTMDDQTAPQHAARWETISDQ
YDTRKTALTQKGRLDSVYKPVPPDLLYLDETRFAAALAPHRVLHFSPLPAATGPNVIDAG
GRVGRNFAPERQQENINIFEALCDHIRDMRQSRAVILASWSEGARQRLMQILTDQGLSGL
VKLDHFTPDLPKGSISCVIWPLEEGFTAPNLAVISEQDVLGDRLIRPRRKTKRAENYLTE
AQSLSAGDLVVHVDHGIGRFKGLETITAAGAPHECLALEYAGGDRLFLPVENIELLSRYG
HDEGLLDKLGGGAWQAKKARMKERIRLIADKLIRIAAERELRQAPILGTPDDMWENFCAR
FPYEETEDQLSAIADVVEDLARGRPMDRLIVGDVGFGKTEVAMRAAFIAAASGLQVAVIA
PTTLLARQHARTFAERFRGFPLKVAQLSRFVSAKEAAETRAGLADGTVDIVIGTHALLAK
GVRFANLGLLVIDEEQRFGVNHKERLKEFRSEVHVLTLSATPIPRTLQMSLSGVRDLSLI
GTPPVDRLAIRSYVSEFDAATIREALLREHYRGGQSFYVVPRIEDLPEIETFLRDHVPEV
SFVVAHGQMAAGDLDDRMNAFYDGKYDVLLATTIIESGIDIPTANTMVIHRADMFGLAQL
YQIRGRVGRAKTRAYAYLTTKPRGKLTPAAEKRLRVLGSLDSLGAGFTIASQDLDIRGAG
NIVGEEQSGHVREVGFELYQSMLEEAIAAIRSGAAESTVSDGQWSPQINLGVPVMIPEAY
IPDLDVRLGLYRRLSQLESKVDLEGFAAEMIDRFGPLPREVNTLLLVMRIKAMCKRAHIA
KMDAGPKGATLQFHNDKFPNPAGLVAFVENQRGLAKIKDNKIVIRRDWAKDADKIKGAFA
IARDLAEQAKG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgcaaaaccccaacccgcccatattcgcgcctctggcgtgcccgaaggatat
gacgcgcagatgatcctgcgcgaattagagcgcgcggggtctgatgagacaatggtgctg
catattgcgcgtgatgacaaacgtgctgaaagcattgccgctgcgctgcaattctttgcc
cctgatctgacccttctgcgctttcccggctgggattgtctgccctatgatcgcatctcc
cccaatgccgaaatttcagcgcggcgcatggcgaccttagcgcggttggtgcagggcggg
gttgggcctgcggttgttttaaccacgctcaatgcggccacgcaatttttgcccccgcgc
gatttgctgcgtgaggcggcctttcacgccactgtgggtcagcgcatagacgaagacgcc
ttgcgcgcctttttggtgcgcatggggttcacgcaaacccccactgtgaccgaggcgggg
gattatgccctgcgcggcgggattattgacatttggcctgcgggaacgccgcaaccctat
cggcttgacctttttggcgatgttcttgatgggctgcgcagttttgaccctgtcacgcag
cgcagtcttgaaactctgacccatttatcgctttcgcccgtctccgaggttgtgatggac
gaggccgcaatcacgcggtttcgacagaattaccgcatcgaatttggggctgcgggaaat
gatgatccgctctacgaggcggtcagtgcggggcgtaaataccaaggcgtggaacattgg
ctgccctattttcaccccaagcttgagactttgtttgattatctgcccgatgccgtggtc
acgatggatgaccagactgcgccgcagcacgccgcacgatgggagacgatcagcgatcaa
tatgacacgcgcaaaacggcattgacgcaaaaggggcggttggacagcgtctataaacct
gtgccgcctgacttgctctatctggacgagacgcggtttgccgccgctttggcgccgcat
cgggttttgcatttctcaccgctgcctgccgccacgggcccgaatgtgattgatgcaggc
ggacgtgtcgggcgcaatttcgcgcctgaacggcagcaagagaatatcaatatatttgag
gcgctttgcgatcatatccgcgatatgcgccaatcgcgcgcggtaattttggcctcttgg
tcagaaggggcgcggcaacgcctgatgcagattttgaccgatcaaggcttgtctggtttg
gtcaaacttgatcatttcacgcctgatctgcccaaaggcagcatctcttgcgtgatctgg
ccgcttgaggaggggtttaccgcccccaatctagcagtgatctcagagcaagatgtgttg
ggcgaccggctgatccgtccccgccgcaaaaccaaacgtgccgagaattacctgaccgag
gcgcaaagcctttcagcgggtgatctggtggtgcatgttgatcacggcatcgggcggttt
aaggggcttgaaaccatcaccgccgcgggcgccccgcatgaatgtttggcccttgaatat
gcaggcggggatcgtctgttcttgcccgttgagaatatcgaacttctcagtcgctatggc
catgatgagggtctgcttgataagcttggcggtggcgcatggcaggcgaaaaaggcgcgg
atgaaggaacgcatccgcctgattgcggataagcttattcggattgccgccgaacgcgaa
ttgcgccaagcgccgattttgggcacgcccgatgacatgtgggagaatttctgcgcccgc
ttcccctatgaggaaaccgaggatcagctgtctgccatcgcggatgtggtggaagatttg
gcccgtggccgccccatggatcgcttgatcgtgggcgatgttgggttcggcaaaaccgaa
gtcgccatgcgcgcggcctttattgcggcggcctctggcctgcaggtggcggtgatcgcc
cccacgacattgcttgcgcgtcaacacgcccgcacctttgccgagcggtttcgtggcttc
ccgcttaaagttgcgcaattgtctcgctttgtgtccgcgaaagaagccgcagaaacccgc
gcagggttggcggatgggacagtggatattgtcatcggcacccacgcgctcttggccaaa
ggggtgcgctttgccaatcttgggcttttggtgattgatgaagagcaacgctttggcgtg
aaccacaaagagcggctcaaagaattccgctctgaggttcatgtgctgaccctatcggcc
acgcccattccgcgcacattgcagatgtcgctttctggtgtgcgtgaccttagcctgatt
ggaacgccgccggttgatcggttggctattcggtcttatgtcagcgaatttgacgcggcc
accatccgcgaggcgctgttgcgcgaacattatcgcggtggtcagtccttttatgttgtg
ccgcgcattgaagacttgcccgagatcgaaaccttcctgcgggatcatgtgccagaggtc
agtttcgtggtggcgcatggccagatggccgcaggtgatctcgatgatcgcatgaatgcg
ttttacgatggcaaatacgatgttctgcttgccacaacgatcattgaatcggggattgat
atcccgaccgccaatacgatggtcattcaccgcgcggatatgtttggtctggcgcagttg
tatcagatcaggggccgtgtagggcgcgcgaaaacccgcgcctatgcctatctgacgacc
aagccgcgcggaaaattgacccccgccgctgaaaaacgcctcagggtgttgggcagcctc
gacagtcttggtgcaggcttcaccatcgcatcccaagacctcgatattcgcggggcaggc
aatatcgtgggtgaggagcaatcgggccatgtccgcgaggtggggttcgagctgtatcaa
tccatgttggaggaggcgattgccgccatccgctctggtgcggccgaaagcactgtcagt
gacgggcaatggtcgccgcagatcaatttgggcgtgcctgtcatgatccccgaggcctat
atccccgatttggatgtgcggcttggcctctatcgccgcctgtcgcaattggaaagcaag
gtcgatctcgaagggtttgccgccgagatgattgaccgcttcggcccgctgccgcgcgaa
gtgaacacgctgcttttggtcatgcgcatcaaggcgatgtgcaaacgcgcccatatcgcc
aagatggatgcggggcccaaaggggcgactttgcaattccataatgacaaattcccgaac
cctgcgggccttgttgcctttgtcgaaaatcagcgcgggttggctaagatcaaagataat
aaaatcgtcattcgccgtgactgggccaaggatgccgataagatcaaaggggccttcgca
attgcccgcgatctggccgaacaggcgaagggctag
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