Rhodococcus pyridinivorans TG9: CEJ39_07450
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Entry
CEJ39_07450 CDS
T05830
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rby
Rhodococcus pyridinivorans TG9
Pathway
rby03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CEJ39_07450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rby03400
]
CEJ39_07450
Enzymes [BR:
rby01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CEJ39_07450
DNA repair and recombination proteins [BR:
rby03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CEJ39_07450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Big_4
Motif
Other DBs
NCBI-ProteinID:
AWZ24038
LinkDB
All DBs
Position
1553068..1555422
Genome browser
AA seq
784 aa
AA seq
DB search
MPTRTIGGHRITLTNLDKVLYPSTGTTKGEVVEYYEAVAEAMLPHIVGRAATRNRWPNGV
GEQSFFEKNLPDHAPAWLDRRTLHHKDRRVTYPLFDSAAGLVWLGQQAALELHVHQWRFD
GEKVGPATRIVFDLDPGPGVGLAECAEVARHVRDTVAELGWSAYPVTSGSKGIHLYVPLD
RMLSSSGASKVAKQVARNLETTLPDLVTATMAKSAREGKVFVDWSQNNSSKTTVAPYSLR
GRDEPWVAAPRSWDELDDPDLAQLQFREVLARIEEFGDLLAGLDPPLGKAVSGGKTVSGG
DALDTYRGKRDASRTPEPVPDRVPDDGPGNRFVIQEHHARRLHYDLRLERDGVLASWAVP
KNLPDTSGRNNLAVRTEDHPIEYLTFHGTIPKGEYGAGSMTVWDTGTYETEKWRDDEVIV
RFHGDRIEGRYALIRTEKNQWLAHRMKDQSSPSTESSDADPTSLVGLSGSKAFPRDLAPM
LATSGDVSGLDAEDWAFEGKWDGYRAIAEIEDGTVRLRSRSGRDVTGDYRKLVELATILD
GHRAVLDGEIVAVDRSGVTSFSMLQRGVNYEYRVFDVLYLDGVSLLRKTYDDRRRVLEAL
AAATDGLIVPDLLSGDGSKALARSRAKNWEGVVAKRRDSVYLPGKRGAGWIKSKNWLTQT
VVLGGYRRGNGNRASTFGSLLLGVYDDDGEFVYVGKVGTGFDDETLLSVAKAVKGRMSRT
NPFANEVPAAERRDAVWLRPDLVGEVRFGGWTEGDRVRHASWRGLRDDVDASSVVREEET
GADC
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccggacgatcggtggtcaccgcatcaccctgaccaacctcgacaaggtgctg
tatccgagcaccgggacgacgaagggcgaggtcgtcgagtactacgaagccgtcgccgag
gcgatgcttccccacatcgtcggccgggcagcgacccgtaatcggtggccgaacggtgtc
ggcgaacagtccttcttcgagaagaacctccccgaccacgcaccggcctggctcgaccgt
cgcaccctgcatcacaaggaccggcgggtcacctacccgctgttcgattccgccgccggg
ctcgtctggctcgggcaacaggcagccctcgaactccacgtgcaccagtggcgtttcgac
ggagagaaggtcggacccgcgacccgcatcgtcttcgacctcgacccggggcccggcgtg
ggcctggccgagtgtgcggaggtcgcgcgccacgtgcgcgacaccgtcgccgaactcggg
tggtcggcctatccggtcaccagcggcagcaagggcatccacctgtacgtcccgctcgat
cggatgctgtcgtcgtcgggggcgtcgaaggtcgcgaagcaggtcgcgcgcaatctcgag
accacccttcccgacctggtgaccgcgacgatggcgaaatcggcgcgcgagggcaaggtc
ttcgtcgactggagccagaacaacagttccaagacgacggtcgcgccgtactcgctgcgc
ggtcgcgacgagccgtgggtggcggcgccgcgcagctgggacgaactcgacgaccccgac
ctcgcgcaactgcagttccgggaggtcctcgcccgcatcgaggagttcggggacctgctc
gccggtctcgacccgcccctcggcaaggctgtgtccggcggcaagaccgtgtccggcggc
gacgccctggacacctaccgcggcaagcgcgacgcgtcgcgcaccccggaaccggtaccc
gaccgcgtccccgacgacggccccggcaacaggttcgtcatccaggagcaccacgcgcgt
cgcctgcactacgacctgaggctcgaacgcgacggtgtgctggcgtcgtgggccgtaccg
aagaacctgccggacacctcggggcgcaacaatctcgcggtacggaccgaggaccacccg
atcgagtacctgaccttccacgggacgatcccgaagggcgaatacggcgccggcagcatg
accgtgtgggacaccggcacctacgagaccgagaagtggcgggacgacgaggtgatcgtg
cggttccacggcgaccggatcgagggacggtacgcgctgatccgcaccgagaagaaccag
tggctggcgcaccgcatgaaggaccagtcgtcgccgagcaccgagtcgtccgatgccgat
ccgacctccctcgtcggattgtcggggtccaaggccttcccgcgcgatctcgcgcccatg
ctcgcgacctccggtgacgtctcgggtctcgacgccgaagactgggcgttcgaaggcaaa
tgggacggataccgcgccatcgcggagatcgaggacggcaccgtcaggctccgcagccga
tccggtcgcgatgtcaccggcgactaccggaagctcgtcgaacttgcgacgatcctcgac
ggtcaccgggcggtgctcgacggggagatcgtcgccgtcgaccgctccggggtgacgagc
ttctcgatgctgcagcggggcgtgaactacgagtaccgcgtgttcgacgtgctgtatctc
gacggggtgtcgctgctgcgcaagacctacgacgatcgccgacgggtcctcgaggcgctc
gccgctgccacggacggactgatcgtcccggatctgctctcgggtgacggctcgaaggct
ctcgcgcgcagccgcgcgaagaactgggagggcgtggtcgccaaacgccgggactccgtg
tatctgccgggcaagcgcggcgccggatggatcaaatcgaagaactggctcacccagacc
gtcgtgctcggcggataccgccgtggcaacggcaaccgtgcctcgaccttcggctccctg
ctgctcggcgtctacgacgacgacggtgagttcgtgtacgtcggcaaggtcggcaccggt
ttcgacgacgagacgctcctgtcggtggcgaaggctgtgaaagggcgcatgagccgcacg
aacccgttcgcgaacgaagtgccggccgccgaacgccgcgatgcggtgtggttgcggccc
gatctcgtgggggaggtgcggttcggaggatggacggaaggagaccgggtgcggcacgcg
agctggcgtggtctgcgcgacgatgtggacgcgtcgagtgtggtgcgagaagaggaaaca
ggcgctgactgctaa
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