Rhodococcus pyridinivorans TG9: CEJ39_08145
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Entry
CEJ39_08145 CDS
T05830
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rby
Rhodococcus pyridinivorans TG9
Pathway
rby03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEJ39_08145 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rby03400
]
CEJ39_08145 (mfd)
Enzymes [BR:
rby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEJ39_08145 (mfd)
DNA repair and recombination proteins [BR:
rby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEJ39_08145 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
LSDAT_prok
UB2H
RecG_dom3_C
AAA_22
IstB_IS21
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AWZ24158
LinkDB
All DBs
Position
1690416..1694030
Genome browser
AA seq
1204 aa
AA seq
DB search
MARIALADDRLRRIGELAGSAEQEIVAPPAARPFVAAALAEKTPLLVVTATGREADDLTA
ELTEMFGEGVTQFPSWETLPHERLSPSADTVGRRLHVLRRLARPDDRDLGPALRVVVATV
RSLVQPMAPGLGEIDPVTLRVGTEHDFEELVERLVELAYTRVDMVGKRGEFAVRGGILDV
FPPTADHPVRVEFWGDEVTELRCFSVADQRSISEVDVPVLVAPPCRELLLTDEVKARAAQ
LAEDNPADAALVEMLDKMAGGIPVEGMEALLPVLQPGELQLLTDVLPAGAHVLICDPEKV
RTRASDLARTGQEFLEASWTAASIGGAAPLDTSNLNGVDGRKLDLGASAYRSLRQVREAA
QAAGRPWWTLSPLASGADTELVLDVQPAPEVRGSEDLLSMLFVNLRAHVTAGGRAVIVVA
GAGTGQRILERLKENEVPAAKLEPGTEPVRGQVGVMRGCLHEGVVLPGNDDNVVPGLVVV
TEADLTGNRAVTEGRKTPVKRRNQVDPLALNAGDFVVHDQHGIGKFVEMVERTVGGARRE
YLVIEYAPGKRGQPGDKLFVPMEQLDQLSRYVGGELPSVSKLGGSDWANTKRKARKAVRE
IAGELVRLYAARQASPGHAFAPDSPWQKEMEDAFPFTETQDQLTVISEVKADMEKAVPMD
RVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERMAAFPVTVKGL
SRFTDASDSRAITEGMADGTVDIVVGTHRLLQTGIRWKDLGLVIVDEEQRFGVEHKEHIK
ALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVGAYNDKQVAAAIR
RELLRDGQVFYVHNRVSSIDKAAKRLRDLVPEARVAVAHGQMNEETLEKTVQGFWQREFD
VLVCTTIVETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGYAYFLYPAEKPLT
ETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAV
EAYRAAADGRTVTTDEAPKEVRIDLPVDAHIPADYVASDRLRLEAYRKLAAANDDAAIAT
VVDELVDRYGPLPDEVQRLVSVGRLRLLCREYGLEEVAVTGTQIRISPMELPDSKQMRLK
RLYPGAQYRATSGLVQLPIPRTGGVGSDRVRDVALLQYIADFLLALDGKPQGSVDLNSAA
TVNA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttggcgcggatcgcgctggccgacgacagactgcgcaggatcggcgagctcgccggttcc
gccgaacaggagatcgtcgccccacccgccgctcggccgttcgtcgcggcggcgctggcc
gagaagacacctctgctcgtggtcaccgccaccggacgcgaggccgacgatctcaccgcc
gaactcaccgagatgttcggcgagggcgtcacgcagttcccctcgtgggagaccttgccg
cacgagcgcctgtcgccgagcgccgacacggtcggccgtcgcctgcacgtcctgcgtcgc
ctcgcccgtcccgacgatcgcgatctcgggcccgcactgcgggtcgtcgtcgccaccgtg
cggtcgctggtgcagccgatggctcccggactcggcgagatcgaccccgtcacgctgcgg
gtcggcaccgaacacgacttcgaggaactcgtcgagcggctcgtcgaactggcgtacacc
cgcgtcgacatggtcggcaagcgcggtgagttcgcggtgcgcggcggcatcctcgacgtc
ttcccgcccaccgccgaccatccggtccgcgtcgagttctggggcgacgaggtcaccgaa
cttcgctgcttctccgtcgccgaccagcgttcgatctccgaggtcgacgtgccggtgctc
gtcgcgccgccgtgccgcgaactgctgctcaccgacgaggtcaaggcccgcgccgcgcag
ctcgccgaggacaacccggccgatgcggcgctcgtcgagatgctcgacaagatggccggc
ggcatccccgtcgagggcatggaagcgttgctgccggtgctgcagcccggcgagttgcag
ttgctcaccgacgttctgcccgccggggcgcacgtgctgatctgcgacccggagaaggtc
cgcacccgtgcgagcgatctcgcccgcaccgggcaggagttcctcgaggcgtcgtggacg
gccgcctcgatcggtggtgcggcgccgctcgacacctcgaacctcaacggggtggacggc
cggaagctcgatctcggcgcgtcggcctaccggtcgctgcgtcaggtgcgcgaggccgcg
caggccgcgggcagaccgtggtggacgctcagcccgctcgcctccggtgccgacaccgaa
ctcgtcctcgacgtgcagccggcccccgaggtccgcggctccgaggacctgctgtcgatg
ctgttcgtgaacctgcgcgcccacgtcaccgcggggggccgcgcggtgatcgtcgtcgcc
ggtgcgggcaccggacagcgcatcctcgagcggctgaaggagaacgaggtccccgccgcg
aagctcgaaccgggcaccgaaccggtgcgcgggcaggtcggcgtcatgcgcggttgcctg
cacgagggcgtcgtcctccccggcaacgacgacaacgtggtgccggggctggtggtcgtc
accgaggccgacctcaccggtaaccgcgcggtcaccgagggccgcaagactcccgtcaag
cgtcgcaaccaggtcgacccgctcgccctgaacgccggtgacttcgtcgtccacgaccag
cacggcatcggcaagttcgtcgagatggtcgagcgcacggtcggtggtgcccgccgcgag
tatctcgtcatcgagtacgcgcccggcaagcggggccagcccggcgacaagctgttcgtg
ccgatggagcagctcgaccagctctctcggtacgtcggcggtgagctgccgtccgtcagc
aagctcggcggatccgactgggccaacaccaagcgcaaggcgcgcaaggcggttcgcgag
atcgcgggcgagctcgtgcggctgtacgcggcgcggcaggcctcgcccggccatgccttc
gcgcccgactcgccgtggcagaaggagatggaggacgccttccccttcacggagacacag
gaccagctcacggtgatctccgaggtcaaggccgacatggagaaggcggtgccgatggac
cgcgtcgtgatcggcgacgtcggctacggcaagaccgagatcgcggtgcgtgcggccttc
aaggccgtgcaggacggcaagcaggtcgcggtgctcgtccccacgaccctgctcgcgcag
cagcacctgcagaccttcaccgagcggatggcggctttccccgtgacggtgaaggggctg
agccggttcaccgacgcatccgattcgcgcgcgatcaccgagggcatggccgacggcacc
gtcgacatcgtcgtcggcacccaccgcctgctccagaccgggatccgctggaaggacctc
ggtctcgtgatcgtcgacgaggagcagcgtttcggcgtcgagcacaaggaacacatcaag
gcgctgcgcacgcacgtcgacgtgctcacgatgtcggccacaccgatcccgcgaaccctc
gagatgagcatggccgggatccgcgagatgtcgaccatcctcaccccgcccgaggagcgg
cacccgatcctcacctatgtgggtgcctacaacgacaagcaggtcgccgcggcgatccgc
cgagagctgctgcgcgacggccaggtcttctacgtccacaaccgggtgagctcgatcgac
aaggccgccaagcgactccgcgatctcgtccccgaggcgcgggtcgcggtcgcgcacggg
cagatgaacgaggagacgctcgagaagacggtgcagggcttctggcagcgcgagttcgac
gtgctggtgtgcacgacgatcgtcgagaccggcctcgacatctcgaacgccaacacgctc
atcgtcgaacgtgcggattcgctcggtctgtcgcagctgcaccagttgcgcggccgcgtc
gggcgttcgcgtgagcgcggctacgcgtacttcctgtacccggcggagaagccgctgacg
gagaccgcctacgaccgactcgccacgatctcgcagaactccgatctcggcgcgggtatg
gccgtggccatgaaggacctcgagatccgcggcgccggtaacgttctcggtgccgaacag
tccggccacgtcgccggcgtgggcttcgacctgtacgtgcggctcgtcggcgaggccgtc
gaggcataccgggccgcggccgacggccgcacggtcaccaccgacgaagcgcccaaggag
gtgcggatcgaccttcccgtcgacgcgcacatcccggccgactacgtcgcatccgaccgg
ctgcgcctcgaggcgtaccgcaagctcgccgccgcgaacgacgacgccgcgatcgccacg
gtcgtcgacgaactcgtcgaccgttacggtccgctgcccgatgaggtgcagcggctcgtg
tccgtcggccggttgcggttgctgtgccgcgagtacggcctcgaggaggtcgcggtcacc
ggcacccagatccggatctcgccgatggagctgcccgactcgaagcagatgcggctcaag
cggttgtacccgggagcgcagtaccgcgcgacgagcggtctcgtgcagctgccgatcccg
cggaccggcggggtcggatcggatcgggtgcgcgacgtggcgctgctgcagtacatcgcc
gacttcctgctcgccctcgacggcaagccgcagggctcggtggacctgaacagcgcggcg
acggtgaatgcatga
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