Roseiflexus castenholzii: Rcas_1478
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Entry
Rcas_1478 CDS
T00585
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rca
Roseiflexus castenholzii
Pathway
rca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rcas_1478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rca03400
]
Rcas_1478
Enzymes [BR:
rca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rcas_1478
DNA repair and recombination proteins [BR:
rca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rcas_1478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABU57572
UniProt:
A7NJA2
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All DBs
Position
1887478..1891218
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AA seq
1246 aa
AA seq
DB search
MTTTTILSMTALLNEITSLAPVQELMATLRSCAGARLHIAPAPGAARTPLVAAVAVNAAA
PMVYVVSTTDAALRAYDDLRQWLGDDRVVIFPAGDALPYEHMSTGSDVLAARMRVLRRLA
AFVAADGMPSVIVAPVKALMQPTLTPDELRTGSIRLERGVPCLLDDLMERLIDLGYRYAP
TVEEPGEVNRRGGIIDVFPPGDDLPLRIEFFGDEIDSLRRFDPLTQRSEAQISAAIIDPP
HEFPLWQRAAALERMRNIDTSTLRREALDEWLRAFEHIQRGERFEGRALFAPFFRDAMDA
PATLLRHLPSGAIVALNDALLLAQHAAELDHQAETRRRQQIDAGELPAAFPRPYLRWHEL
IAQAESLTLADFSNNERPIWDALLPDPVLSDAFQQGNGAEPTIPRPAPDSSDARFRLHLL
PERLFLPADLFGGQIRRLVEDIVERLHAGERVIVVTPQAARLQELVAEGMQRDIEPAVDP
SLFTAIHGSLDAGFRLPALRLTLFSDSEIFGWRQRRIVTGKQRRRERSVEDRAAFLRGLK
PGDYVVHIEHGIAVYEGLVRRSVGGVARDYLNLRYAEGDRLYVPVDQIDRVSRYIGAGDA
EPQLTRLGTQDWERAKRKARAAVQDLADELIGLYAQRQLAEGHAFSPDTEWQRELEASFP
YVETPDQLKAIIDVKRDMEQPQPMDRLICGDVGFGKTEVALRAAFKAVQDGKQVAVLAPT
TVLVQQHYDTFSRRMAAFPVRVEMISRFRSAKEQSDIVRRLARGEIDVIIGTHRLLSKDV
VFKDLGLLVVDEEQRFGVRHKERIKQLRTNVDVITLTATPIPRTLHMALAGIRDLSVIDT
PPEDRIPIKTYVLPYDENLIREAILRELDRGGQVYFVHNRVQSIYYVADRLRQLVPEARI
AVGHGQLDERQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATHFGLAQLYQ
LRGRVGRGTQRAYAYLFYRSERPSTPEAQERLQAIQEATELGAGFRIAMRDLEIRGAGNL
LGAEQSGHIAAVGFDLYSRLLEQAVRTLKQRLIATNLITGADVLRATPTTETTAPTPLRP
SPAPRQPPVRVDEKVLISPLVTLDLPLDAYLPVDYIPDDQVRLAAYQRMAEAQTPEAVHD
LRQELRDRFGELPEPAEQLLIWLRIKALALAAGVTSVVTTDEEFIVRLPEGANRQRTRLE
RRFARTRGIRIGPQFVRIDRRVYNVGGDPAWIEVMCEVLGVLGVKD
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaacgactattctttcaatgaccgcgctcctcaatgagattacgtcgcttgcg
ccggttcaggaactgatggcgacgctccgttcatgcgctggcgcgcgcctgcacattgcg
cccgcgccgggagccgcgcgcacgccattggttgctgccgtcgctgtcaatgctgctgcg
ccgatggtgtatgtcgtgagcacgaccgatgcagcattgcgcgcgtatgacgatctgcgc
cagtggcttggcgatgatcgggtggtgatctttccggcgggtgatgcactgccgtatgag
catatgtctaccggcagcgatgttcttgcagcgcgtatgcgcgttttgcgtcgcctggct
gcgttcgttgccgccgatggtatgccgtcggtgatcgttgctccggtcaaggcgttgatg
cagccaacgctgacgccggatgaactgcgcaccggcagtattcgcctggagcgaggcgtc
ccatgccttctggacgatctcatggaacggctgatcgatctggggtaccgctatgcgcca
acggtcgaagagccaggggaggtcaatcggcgtggcggcattatcgacgtgtttccgccg
ggagacgatctgccgctgcggattgagttctttggcgatgaaatcgatagcctccgccgt
ttcgatccgttgacgcagcgcagtgaggcgcagatcagcgccgcgatcattgatccaccg
cacgagtttccgttatggcagcgcgcggcggccctggagcgcatgcgcaacattgataca
tcgacgttgcggcgtgaggcgctcgatgagtggttgcgggccttcgagcatatccagcgc
ggtgagcggttcgaggggcgtgcgctctttgcgccgttcttccgtgacgcgatggatgcg
cctgcgacgttgctgcgccatctgccgtcgggcgctatcgtggcgcttaacgatgccttg
cttctggcgcagcatgccgcagaactcgatcatcaggcagaaacgcgccgccgccagcag
atcgatgctggcgaacttccagcagcgtttccgcgtccctatctgcgctggcacgaactc
atcgcacaggcggaatcgttgacgctggcggatttcagcaataacgagcgaccgatctgg
gacgcgctcctccctgatcctgtactgtccgatgcgtttcagcagggcaacggcgccgag
ccgacgatcccgcgcccggcgccggattcgtcggatgcacggtttcgcctgcatcttctg
ccggaacgcctgtttttgcctgccgatctgtttggtgggcagattcggcgtctggttgag
gatattgtcgaacgactgcatgctggcgagcgggtcatcgttgtgacgccgcaggcggcg
cgcttgcaggagttggtcgcggaagggatgcagcgcgatattgaaccggcagtcgatcca
tcgctgtttactgctatccatggctcgctcgacgccgggttccgtctgcccgcgttgcgc
ctgaccctcttcagcgacagtgaaatctttggttggcggcagcgccggattgtaaccggg
aagcaacggcgacgcgaacggagcgtcgaagatcgcgcagcgttcctgcgcggtctgaaa
ccaggcgactatgtggtccatatcgagcacggcattgccgtctatgaaggattggtgcgg
cgcagcgtcggcggcgtcgcgcgcgactatctgaacctgcggtatgctgaaggcgaccgg
ctctacgttccggtcgatcagatcgaccgcgtttcgcggtatatcggcgccggtgatgcc
gaaccgcagttgactcgccttggcacgcaggattgggagcgcgcgaaacgcaaagcgcgc
gccgcagtgcaggacctggcggacgagttgatcggtctctatgcgcagcgccagctggca
gaggggcatgcattcagcccggataccgagtggcaacgtgaactcgaagccagttttcca
tacgtcgaaacccccgatcaactcaaagcgatcatcgatgtcaagcgcgatatggaacag
ccgcagccaatggatcgcctgatctgcggtgatgtcgggtttggcaagacggaagtggcg
ctgcgggcggcgttcaaagctgtgcaggacggcaaacaggtggcggtgctggcgccaacg
acggtgctggttcagcagcactacgataccttcagccggcgcatggcagcgtttcctgtc
cgggtcgagatgatttcgcgctttcgttcggcaaaggaacagagtgacatcgtgcgacgg
ctggcgcgtggcgagatcgatgtgatcatcggcacccatcgcctgctctcgaaggatgtg
gtcttcaaagatctcggattgctggtggtcgatgaagagcagcggtttggcgtgcgccat
aaagaacgcatcaagcaattgcgtacaaatgtggacgttatcaccctgacagcaactccg
attccgcggacgctccatatggcgctggcaggaattcgtgatctgagcgtgatcgacacg
ccgcctgaggatcgcattccgatcaaaacctatgtccttccatacgacgagaacctgatc
cgcgaagccatcctgcgcgaacttgatcgtggcggtcaggtctacttcgttcacaatcgg
gtgcagagcatttactacgtcgccgaccggctgcgccagttagtgccggaagccagaatc
gcggttggtcacgggcaactcgacgaacgccagttagagcgggtgatgctcgacttcttc
accggtagggatgatgtgttggtctgtaccacgatcatcgagagcgggctggatgttcca
aatgccaacacgatcattatcgacgatgcaacgcacttcgggctggcgcagttgtaccag
ttgcgcggacgggtggggcgcggcacgcagcgcgcctatgcctacctcttctatcggtcg
gaacgtccttcgacgccggaggcgcaggagcgacttcaggcgatccaggaggcgactgaa
cttggcgccgggttccgcatcgctatgcgcgatctcgaaattcgaggcgcggggaatctg
ctcggcgccgagcagagcgggcacatcgccgccgtggggttcgatctctactcacggctg
ctcgaacaggctgtgcgcacattgaagcagcggttgattgcgaccaacctgatcaccggc
gccgacgtattgcgcgcgaccccgacgacagagacgactgcgccgaccccgctgcgacca
tcgccggcgcccaggcaaccgccggtcagggtcgatgagaaggtgctgatttcgccgctg
gtcaccctcgatcttccgctcgacgcttatctgcccgtcgattatattcctgatgaccag
gtgcggctggcggcataccagcgcatggcggaggcgcagacgccagaagcagtgcatgat
ctgcgccaggaattgcgggatcgcttcggtgaacttccggaaccggcggaacagttactc
atctggttgcggatcaaagcgcttgcactggcggcaggcgtgacgtcggtggtcacgacc
gatgaggagttcattgtgcggctgccggaaggcgccaacagacagcggacgcggttggaa
cgtcgttttgctcgcaccaggggcattcgcatcggtccgcagttcgtgcgcatcgaccgg
cgggtttataacgtggggggcgacccggcgtggatcgaggtgatgtgcgaggtgttgggg
gtgttgggggtgaaggattga
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