Roseiflexus castenholzii: Rcas_2327
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Entry
Rcas_2327 CDS
T00585
Name
(GenBank) alpha amylase catalytic region
Organism
rca
Roseiflexus castenholzii
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Alpha-amylase
CBM_20
fn3
Malt_amylase_C
Alpha-amylase_N
hDGE_amylase
Motif
Other DBs
NCBI-ProteinID:
ABU58410
UniProt:
A7NLL9
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Position
3000323..3004528
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AA seq
1401 aa
AA seq
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MSHHRHRRGTVLLALIGMLLTVVALPGALPVARASDTPDPSSVTIAGSFQSELGCPGDWQ
PECAITRLVYDAADQVWQATFTIPAGTWEYKAALNGSWDENYGANAQRNGANIPLTLSAA
ASVRFYYDHETHWVVSDRNTRIVTAPGNYQSELGCPGDWQPDCLRSWLQDPNGDEVFVRT
VTGLPAGNYEFKIAIHESWSENYGAGGAPGGANIPFTVPAPGYRVTFTFVSATNTPSVAV
VSAGAQPDNNVEWDGVRHDSRDPLYRAPGGAVPAGTPVTIRLRTFHNDVTSVRLRVYDLN
ASTQRFYDMAPAATDVDCYEASLAGKTCDFWEVMLTQAAPNNLWYRFIVTDGTDTDYYDD
NTPALDGGLGAMTDEQEDHSWALMFYDPAFTVPEWATSAVIYQIFPDRFRNGDPRNDPRT
GDSRYDDPVIALPWGELPEGHCRNYSDAATNCPWRFDDTPPSWSPTKEGPRGRDYYGGDL
RGVISRLDYLKNLGVTVIYFNPIFHAKSNHRYDTYDYFRIDPALGTLADFRRLVREAERR
GIRVIVDSVFNHMSSDSPQFDRYGYYASLGACESAASPYRDWFRFRRPGPGEPSPCAPST
PGGDDTYYVGWFGFDSIPEIRKEHPAVLNYFVTGSNSVSRYWLRQGASGWRLDVMGDPSF
PPDYWPTFRRVVRETRHDALIIGELWQKDSTLLRHLRGDTADTTMNYRLRDAIIGLLTPG
PFDSKGFADSGRPIAPSEFAHRISSIREDYPDAAYLTLMNLVGSHDTERILWTLTPGAET
RADKEFNAANLANGKQRLRIASLIQFTMPGAPTIYYGDEVGVTGDDDPDDRRTYPWVETG
GNPDRALLRHYRDLARIRHHYRSLRAGDLRFLLADDTAGTVAYSRISGDDAAIVAINRSS
QPRTVDIPVSGVIPDGTAFFPSYCVANDQLKDWLHVENGRLRVTLNPMSAVLLTSYLADL
TPPASPANLWVTDEGDGQVSLTWNGVPGAAGYNLYRSPLSGGGFVKVNDAPLTAIVYTDT
GLRNARDYFYVVTAVDEKGNESAVSNEVRAMPRLQIGWANLQWPPSITHTISAINRTPLI
FGQVWINGVTNRPGATEGLRAQLGYGPRDSDPAGNPAWTWIEAEFNVDAGNNDEFKASLL
PDQTGAFDYAYRYSTTNGRSWVYADLDGIGNGYTPSQAGKLTVVASSDTTPPVVPTGLTV
VTASPTGIALRWNAVTGDPTLYGYEVRRSSVSGGPYTTIATITGAEYTDTSIIQGATYYY
VVRAVDTSFNRSGESAEVAATAELRTVSVTFTVTVPATTPAGSTVYIAGFLDRLDGNLPQ
WNPGGVALTQIGPNRWSITLTGKETTQIEYKYTLGSWDYVEKGAACDEIANRQLTLSYGV
DGTQVVNDSVPNWRNVAPCGN
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgagccaccatcgtcatcgtcgcgggaccgtgctgttggcgctgatcggcatgctgctc
acggtcgttgcactccccggcgcgctacccgtcgcgcgcgcctccgacacccctgatccg
tcgtccgttaccattgccggaagttttcaaagcgaactgggttgtccaggcgactggcag
ccggaatgcgccatcacccgcctggtctacgatgccgccgatcaggtctggcaggcgacg
ttcaccatccctgccggaacctgggagtacaaagccgcgctgaatgggtcgtgggacgaa
aactatggcgcgaatgcgcaacgcaacggcgcgaatattccgctcacgctgagtgctgcg
gcatccgtcaggttctactacgaccatgagacgcactgggttgtcagcgaccgcaacacg
cgcattgtgacggcgccgggcaattaccagagcgaattgggttgcccgggcgactggcag
cccgattgtttgcgctcctggttgcaagacccgaacggcgacgaggtgttcgtcagaacc
gtcaccggactgcctgccggaaactatgagttcaagattgccattcatgagagttggagc
gaaaattatggcgccggcggcgcacccggcggcgcgaacatccccttcaccgtgcctgcg
cccggctatcgggtgacgtttaccttcgtctctgcgacgaacactccttccgttgcggtc
gtcagcgccggagcacagccggataacaatgtcgaatgggacggggtgcgccacgactcg
cgcgacccgctctaccgcgcgccgggaggggcggttccagccgggacgccggtcaccatc
cgcctccgaacgttccacaatgatgtcacgtcggtgcggctgcgggtatacgacttgaat
gccagcacgcagcgtttctacgacatggcgccggccgcgaccgatgtagactgctatgag
gcgagtctggcgggcaagacatgcgatttctgggaggtgatgctcactcaggcagcgccg
aataacctgtggtatcgcttcattgttaccgacggaaccgacaccgactactacgacgac
aataccccggcgctcgatggcggtttaggcgcgatgaccgatgagcaggaagatcacagc
tgggcgctgatgttctacgatccggcgtttactgtgccggagtgggcgacgagtgcggtg
atctaccagattttcccggatcgcttccgcaacggcgacccgcgcaacgatccgcgcacc
ggcgatagccggtatgacgacccggttatcgcgttgccgtggggtgaactgcccgaaggg
cactgccgcaactacagcgatgctgcgacgaattgcccctggcgcttcgacgatacaccg
ccctcctggagtccgacgaaggagggtccgcgcggacgggactactacggcggcgacctg
cgtggtgtgatcagtcgccttgactatctcaagaacctgggtgtgacggtcatctatttc
aacccgatcttccacgcgaaatcgaaccaccgctacgatacctacgactacttccgcatc
gacccggcgctcggcacactcgccgacttccggcgtctggtgcgcgaagcggagcggcgc
ggcattcgtgtgatcgtcgatagcgtgtttaatcatatgtcgtcggacagcccacagttc
gaccgttacggatactacgcctcgctcggcgcatgtgaatcggccgcatcgccctaccgc
gactggttccgcttccgtcgtcccggaccgggcgagccgtcgccgtgcgctccctcgaca
cccggcggcgatgacacgtactatgtcggatggttcgggttcgacagcattcccgaaatt
cgcaaggaacatccggcagtgctgaactatttcgtgaccggatcgaacagtgtgtcgcgc
tactggctgcgccagggtgcgagcggctggcgcctcgacgtaatgggtgacccgtcgttc
ccgcccgattactggcccacgttccgccgcgttgtgcgcgagacgcgccacgatgcgctg
atcatcggcgaactgtggcagaaggacagcacattgctgcggcacctgcgcggcgacaca
gcggacacaacgatgaattaccgcctgcgcgatgcgatcattgggctgctgacgccggga
ccgttcgactcgaaggggttcgccgacagtggacgcccgattgcgccgtcggaattcgct
catcgcatcagttccatccgcgaagactatcccgacgccgcgtatctgacgttgatgaac
ctggtgggcagccacgacaccgagcgcattctgtggacgctgacgccaggcgccgagacg
cgcgccgacaaggagttcaacgccgccaatctggcgaacggcaagcagcggctgcgtatt
gcgtcgctcattcagttcaccatgcccggcgcgccaacgatctactacggcgatgaagtc
ggtgtcaccggcgatgacgatcccgacgaccgacgcacgtatccgtgggtcgagaccggc
ggcaacccggatcgggcgctgctgcgccactaccgcgatctggcgcgcattcgccatcat
taccgttcgctgcgcgccggcgatctgcgcttcctgctggcagacgataccgccggcacg
gtggcgtattcgcgcatcagtggcgacgatgcggccattgttgccatcaaccgcagttcg
cagccacgcaccgttgacattccggtttccggcgtcattcctgacggcacagcgttcttc
ccctcctactgcgttgccaatgaccagttgaaggactggctgcatgtcgagaacggtcgg
ctacgggtgacgctcaacccgatgagcgctgtgctgctgaccagttacctggcggatctg
acgccgccggcgtctccggcaaacctgtgggtgacggacgagggcgacgggcaggtgagc
ctgacgtggaacggcgttcccggcgctgcggggtacaacctctatcgcagcccattgagc
ggcggcgggttcgtgaaggtcaacgacgcgccgctgacggcgattgtctacaccgacaca
gggttgcgcaacgcgcgcgactacttctatgtcgtgactgcggtcgatgagaaagggaac
gaaagcgccgtctcgaacgaagtgcgcgctatgccgcgcctccagatcggatgggcgaac
ctgcaatggcccccatcgatcacccacaccatcagcgccatcaaccgcaccccgctgatc
ttcggtcaggtctggatcaacggcgttaccaaccgtccgggagcaacggaagggctgcgc
gcgcaactcggctacggaccacgcgacagcgacccggcgggcaaccccgcctggacgtgg
atcgaggcggagttcaatgtcgatgccggcaacaacgatgaattcaaagccagcctgctg
ccggatcagaccggtgcgttcgattatgcctatcgctacagcacaacgaacgggcgctcc
tgggtctatgccgatcttgacggcatcggcaacggctacaccccatcgcaggcaggcaaa
ctgacggttgtcgccagtagtgacaccaccccgccggtggtcccgaccggactgacggtg
gtgaccgcctcgccgaccggcattgcgctgcgctggaacgcagtcaccggcgacccgacg
ctctacggctacgaagtgcggcgcagcagcgtctccggcggaccgtacaccacgattgcg
acgatcaccggcgcggagtacaccgacacgtcgatcatccaaggggcgacctactactac
gtcgtgcgcgcggtggacacatcgttcaaccggtccggcgaatccgccgaagttgcggcg
actgccgagttgcggacggtgagcgttaccttcaccgtgaccgttccggcaacgacaccg
gcaggcagcacagtctatatcgccgggttccttgatcgactcgacggcaacctgccgcag
tggaaccccggcggcgtcgcgctgacgcagatcggaccgaaccggtggtcgatcacgctc
accggcaaggaaacaacccagatcgagtacaagtacaccctgggttcgtgggattacgtc
gaaaagggtgcggcgtgcgacgagatcgccaatcgccagttgaccctgagttacggcgtg
gatggcacgcaagtcgtgaacgacagcgtaccgaactggcgcaatgtggcgccgtgcggg
aattga
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