Riemerella columbina: NYR17_01135
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Entry
NYR17_01135 CDS
T09247
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
rcl
Riemerella columbina
Pathway
rcl00300
Lysine biosynthesis
rcl00550
Peptidoglycan biosynthesis
rcl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
NYR17_01135
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NYR17_01135
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rcl01011
]
NYR17_01135
Enzymes [BR:
rcl01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
NYR17_01135
Peptidoglycan biosynthesis and degradation proteins [BR:
rcl01011
]
Precursor biosynthesis
Amino acid ligase
NYR17_01135
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
UBA_6
MoCF_biosynth
SRP54
Motif
Other DBs
NCBI-ProteinID:
WKS95373
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All DBs
Position
251609..253069
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AA seq
486 aa
AA seq
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MKISDLLQNISVLNTIGNLEQEVSALAMDSRKVEAGTLYIAMRGTVADGHQFITSAIEKG
ATAIVCEDLPQELTEGVVYIQVKDTTEASGLLAANFYGRPSEKLKLIGVTGTNGKTTVST
LLFDVFQKLGYSSALISTVEYRIGTEVFPSTHTTPDVITLNQILAKAVASGCEYAFMEVS
SHGIHQGRIRGLRFAVAGFTNLTHDHLDYHKTFLDYLNAKKAFFDALPKEAIAITNIDDK
NGKVMLQNTLAQKKTYAMKTIADYHGKLLEADFNGMLLNFNGKEFWTTLTGKFNIYNLLL
VFGIAQELGFDAVEILQALSQLKRVNGRFETLKSDGGIFFVVDYAHTPDALENTLDAINE
IRTKNERLITVFGCGGDRDKDKRLAMGKIATRKSTLAIITSDNPRTEDPQQIIREIEAGV
EPQYFSKYTVVPDRKEAIKMAIKFAEPKDIVLVAGKGHETYQDINGVKHHFDDKEVIKTL
CQAMSK
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcagtgatttattacaaaatatatcggttctcaataccatcggaaatctggag
caagaggtgtcagccttagctatggatagccgtaaggtggaggcaggcacgctctacatc
gcgatgagaggcacggtggctgatggtcatcagttcatcacttctgcgattgaaaaaggc
gccacggctatcgtttgcgaagacctcccacaagagctcaccgagggcgtggtttacatc
caagtgaaggataccaccgaggcttcagggctgttggcggctaatttttatggacgccca
tcagagaagttgaagctcatcggcgttacaggcaccaatgggaaaaccacggtgtccact
ttattgtttgatgttttccagaaattaggctattcatcggcgcttatttctacggtggaa
taccgcatcggcacggaggttttcccatctacgcacaccacgccagatgtgattaccctc
aaccagattttagccaaggcagtcgccagcggctgcgagtatgcctttatggaagtttct
tctcacggcattcaccaagggcgtatccgtgggcttcggtttgccgttgcaggatttacc
aacctcacgcacgaccatttggattatcacaaaactttcttagattatctgaatgccaaa
aaagcattttttgatgccttaccaaaggaagccattgcgataaccaatattgatgataaa
aatggtaaggtaatgctccagaatacgcttgctcaaaagaaaacctacgcgatgaaaacc
atagcggattatcacggcaaacttttggaggcagattttaacggaatgctgttgaacttt
aacggaaaagaattttggaccaccctcacagggaagtttaatatttataatctgttattg
gttttcggtatagcacaagaattgggctttgatgctgtggaaatccttcaagctttatcc
caacttaaacgcgtgaatggcaggtttgaaaccttaaaatcagatggcggtattttcttc
gtggtagattatgcccacacgccagacgcgttggaaaataccttagatgccatcaatgaa
atccgcacaaaaaacgaaaggctgatcacggtatttggctgtggcggcgatagggacaaa
gacaaacgccttgcaatgggcaaaatagccacgcgcaaatctaccctagcgattatcaca
tcggataacccaaggacggaagatccacaacagattattcgcgaaatagaggctggcgtg
gagccgcagtattttagtaaatacacggtggtgccagatcggaaagaagccataaaaatg
gcgattaaattcgcggaacctaaagatattgtattggtggcaggaaaagggcacgaaact
tatcaagacatcaatggtgtaaagcatcattttgatgataaagaggtgataaaaaccctt
tgccaagcgatgtctaagtaa
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