Rickettsia canadensis McKiel: A1E_00715
Help
Entry
A1E_00715 CDS
T00603
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rcm
Rickettsia canadensis McKiel
Pathway
rcm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rcm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A1E_00715 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcm03021
]
A1E_00715 (rpoB)
03400 DNA repair and recombination proteins [BR:
rcm03400
]
A1E_00715 (rpoB)
Enzymes [BR:
rcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A1E_00715 (rpoB)
Transcription machinery [BR:
rcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A1E_00715 (rpoB)
DNA repair and recombination proteins [BR:
rcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A1E_00715 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ABV73091
UniProt:
A8EXK8
LinkDB
All DBs
Position
159903..164024
Genome browser
AA seq
1373 aa
AA seq
DB search
MVLLRDNIEVQPLSNNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKIH
SSGKLLYSARVIPYRGSWLDLEFDAKDIIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYY
NSVTYKLVQNKGWAVKFMPGHITAHRLTSDLVDADTGNVLLKAGQKITPRLAQKYFREGL
NNVLVARETLIGKYLSEDLRDPVSDEILAKIGEMITADMLNVINDLKIKNVNVLVVNPQS
GPYIRNTLFADKNQDRETALCDIFRVLRPGEPANIEAAEGLFYNLFFDAERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTLMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDGRVTDEVVYLSAIEEGKYKIGQANSKVDKDGVLQGEFINCRVEGGNF
VMVEPHEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGT
GVEGVVAKDSGASVLALHDGIVEQVDSNRIVIRTLAQKADGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDIFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALSHLDEVGIIYVGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQ
RAIAIEKQQIEKLAKDRDDELEIVEHFVFSWLEKLLVGQVIINGPKQVKAGQTITTEVLK
GLSKGQFWQLTVEDANIMNEIEQIKTHYDEKKEALNKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVQEYQNKKIAIEQIKKFLIKLYGENINSVLERSEEEIIS
FCKKVSKGVHFATPVFDGAKVQDVKDMLKLADQDPSGQVKLIDGRTGEYFDRLVTVGQKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggttttattaagggataatatagaagtacaacccttgtcaaataatagaagaataaga
aaaaattttggtcacataaatttagtagcagatataccaaatttgattgaaattcaaaag
aactcatatgaaaaaaactttctacagttaaatattaaagattctgaaagaaaaaataag
ggtttacaatctatattaaactcaatttttcctatttcagattcttctaatattgctaac
ttagaatttgtaaaatatgaatttgatactccaaaatatgatgtagaagagtgtagtcaa
agaagtttaagttatgctgctcctcttaaagttactttaagattaagtatttgggatata
gatgaggatactggtactagagaaattaaagggattaaagagcaagaagtctatatgggt
gatatcccattaatgactaaaaacggtacttttattatcaatggtacggaaagagtagtt
gtatcacaaatgcatcgctcaccaggtgtattcttttatcatgatgaaggaaaaatccac
tcttccggaaagttgttatattctgctcgcgttattccatatagagggtcttggcttgat
ttagagtttgacgctaaggatattatttattttagaattgatagaaaaagaaaactgtat
gctactactttacttagagctataggcatgagtactgaagaaattattaaattttattat
aattcagtaacttataagcttgttcaaaataaaggttgggcggttaaatttatgcctggg
catattactgctcatcgtttaacaagtgatttagtagatgcagatactggtaatgtttta
ctgaaagcaggacaaaaaattacccctcgtttagctcaaaaatattttagagaagggctt
aataatgttttagtagctcgtgaaactttaattggcaaatatctatccgaagatttaaga
gatcctgtaagtgatgaaatattagcaaaaatcggtgaaatgattactgctgatatgctc
aatgttattaatgatcttaaaattaagaatgttaacgtattagtggtcaatcctcaatca
ggtccgtatataagaaataccttatttgccgataaaaaccaggatcgagagacagcatta
tgtgacatttttagagttttaagaccaggtgaacctgctaatattgaagctgccgaaggc
ctgttttataatttattttttgatgcggaaagatatgatctttcagaagttgggcgaata
aaaatgaattctaggttagagttgaatatttctgaagaagtgacagttttaacaattgat
gatattaaaaatatcgtaagggttttagtagagcttaaagacggtaaaggtatcatagac
gatattgatcatttaggtaacagaagggtgagatcagtaggtgaattaatagaaaatcaa
ttcagaataggtctagtccgaatggaaaaatctgtaattgaaaggatgtccgcaggtgat
gttgatacactaatgcctcatgacttagtaaattctaaaattttagtttcagtagtaaaa
gaattttttagtacttcacaattatcacagtttatggatcaaacaaatccattatcggaa
ataactcataaaaggaggctatcagcactaggtcctggaggtcttagtcgagatcgagca
ggttttgaggtgcgtgacgtacatccgactcattatggtcgtatttgtcctattgaaaca
cctgaaggtcagaatatcgggttaattaactctatggctacctatgctagaataaataaa
cacggctttatagagagtccgtatagaagagttaaagatgggcgtgtaactgatgaagta
gtatatctttctgccattgaagaaggtaaatacaaaattggacaagcaaactctaaagtt
gataaagacggagtgctacaaggagagtttattaattgtcgtgttgagggaggaaatttt
gtaatggtagaaccgcatgaggtagatttcattgatgttactcctatgcaggtagtatca
gttgcagcttctcttatacctttcctagaaaatgatgatgctaatcgtgctttgatgggt
tcaaacatgcaaagacaagccgttcctttaattaaaacggatgcaccttttgtaggtact
ggagttgaaggtgtagtagctaaagattccggagcatcggtacttgcattacatgacggt
attgttgagcaggtagattcaaatagaatcgtgattagaactttagcacaaaaagctgac
ggttctccttcggttgatatttacaatttactaaaatttcaaaaatctaatcataacact
tgtattaatcaaaagcctttagttaaagtcggtcattatgttaagaaaaacgatattata
gctgatggtcctagtacggataacggtgaaattgctttaggtagaaacgtacttgtggct
ttcttaccttggaatggttataattttgaagattcaattttaatatctgaacgtatagta
aaagaggatatttttacatctattcatattgaagagtttgaagtaatagcaagagataca
cgtcttggtcctgaagaaattacgcgtgatataccgaatgtaagtgaagaagcattaagt
catcttgatgaagttggaataatttatgtaggtgcagaagtaaaagccggtgatatttta
gttggaaaagtaacaccgaaaagtgagtcgcctattacacctgaagaaaaattattacgt
gctattttcggggaaaaagcctttgacgtaaaagattcgtcactgcacgtaccttccgga
gttagcggaaccgtagtagaagtaaggatattctctcgtagaggtgtggaaaaagatcag
cgtgctattgctattgaaaaacaacaaattgaaaaattagcgaaagacagagatgatgag
ttagaaattgttgagcattttgtatttagttggcttgaaaagcttttagtagggcaggtg
attattaacggtcctaagcaagtaaaagcagggcaaactattactactgaagtgctaaaa
ggcttatctaaagggcaattttggcagcttaccgtggaagatgcaaatataatgaatgaa
atagagcagataaagactcattatgatgaaaaaaaagaggctcttaataaacgatttgct
actaaggtagaaaaattgcaaagcggtgatgatttacctcagggagctttgaaagtagta
aaagtatttattgcaactaagcataaattacaacctggtgataagatggcaggaagacac
ggaaataaaggtgttatttcacgtatcgtccctgaagaggatatgccgtttttagaagat
ggaacagtggtggatattgttctgaatccgcttggtcttccatctcgtatgaatataggt
cagattttagagacgcatcttgggtgggcatcaataaatttagcaaaaaaaatatctacc
ttagtacaggaatatcaaaataaaaagatcgctattgagcaaattaagaaattcttaatt
aagctgtacggagaaaatattaattctgtacttgaaagatcagaagaagagattatctct
ttctgtaagaaagtaagtaaaggcgtacattttgcaactcctgtgtttgatggagcaaaa
gttcaagatgttaaagatatgttaaagcttgccgatcaagatccttcaggacaagtaaaa
ttaattgacggtagaaccggtgaatattttgatcgtttagtcactgtcgggcagaaatat
ttgctgaaattgcatcatttagtcgataataaaattcactctcgttctatagggccttat
agtttagtaacgcagcaaccgcttggaggtaaatctcattttggcggacagcgttttggg
gaaatggaatgttgggctctacaagcttatggtgctgcttatacgttacaggaaatgtta
acggttaagtcagatgacgtaaacggtaggatcaaaacttatgattctatagtacgcggt
gaaaataattttgaatcaggcattcctgagtcatttaatgttatgataaaagagtttaga
tctttatgtcttaacgtaaagcttgaagtgacttcgagttaa
DBGET
integrated database retrieval system
