Rosa chinensis (China rose): 112167057
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Entry
112167057 CDS
T06020
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03022
Basal transcription factors
rcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112167057
09124 Replication and repair
03420 Nucleotide excision repair
112167057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112167057
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112167057
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112167057
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112167057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
Tfb4
Motif
Other DBs
NCBI-GeneID:
112167057
NCBI-ProteinID:
XP_024159781
LinkDB
All DBs
Position
5:65451165..65454501
Genome browser
AA seq
419 aa
AA seq
DB search
MNNGDQRRLNGELEEDEEDEENNDGLAAWERAYADERSWESLQEDESGLLRPIDNQSLQH
AQYRRRLRAASTTRIQKGLIRYLYIVIDLSKAASEMDFRPSRMGVVAKHVEAFIREYFYQ
NPLSQVGLVTIKDGVAHILTDLGGSPESHVKALMGKLECSGDASLQNALDLVQGYLNQIP
SYGHREVLIMYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAEIFICKHLCQETGGSYY
IALDESHLKDLILEHAPPPPAIAEFAIANLIKMGFPQRAAESSVAICSCHKEAKVGDGYT
CPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSLSLFIDQQNKLPKAC
FGCQQSLLGPGNKPGLHVSCPKCKQHFCLDCDIYIHESLHNCPGCDSTRHSKIPTANEG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacggcgaccagagacgtttaaacggcgaacttgaagaagacgaggaagacgaa
gagaacaacgatggcctcgccgcttgggaaagagcttacgccgacgagcgctcctgggag
tcactgcaagaggacgagtctggccttcttcgccccattgacaaccagagcctccaacac
gcccagtaccgccgccgcctccgcgccgccagcactactcggatacaaaagggtctcatt
cgctatctttatatcgttatcgacctctctaaggcagcctcagaaatggattttcgacct
agccgaatgggtgtcgttgcgaagcatgttgaggctttcattagagagtatttctaccag
aatcctctcagtcaagtaggccttgtgactataaaagatggggttgctcatatcttaacg
gatctcggtgggagtcccgagtctcatgttaaagctctgatgggtaaactggaatgctca
ggtgatgcgtccctgcagaatgcactggatcttgttcaagggtatctaaatcagattcca
tcctatggtcacagggaagttctgatcatgtattcagcgctcagcacctgtgatccaggt
gatataatggaaactattcagaaatgtaagaaatctaaaattagatgctcagttattggt
ctctcagcagaaattttcatatgcaaacatctgtgccaagaaactggtggctcctattat
atcgcattggatgagtcacacttaaaagacttgatattggaacatgcacctccacctcca
gcaatagcagagtttgcaattgctaatttgataaagatgggttttccacaaagagcagca
gagagctctgtggcaatttgctcatgtcacaaggaggcaaaggtcggagatggatacact
tgtccaagatgcaaagcacgggtatgtgagctacctaccgaatgtcgcatttgtgggttg
acactcatttcctcacctcatttggcaaggtcttatcatcatctgttcccaattgtacca
tttgatgaggtctctctgtcactattcattgatcaacaaaacaaattacctaaagcttgt
tttggctgccaacaaagtcttctcggtccgggaaacaaacctggccttcatgtttcttgt
ccaaaatgcaagcagcacttctgccttgattgtgacatttatattcatgagagcttgcat
aactgcccaggttgtgacagtaccaggcattccaagataccgactgctaatgaaggatga
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