Rosa chinensis (China rose): 112198240
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Entry
112198240 CDS
T06020
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112198240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112198240
Enzymes [BR:
rcn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112198240
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112198240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
BRCT
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
112198240
NCBI-ProteinID:
XP_024195094
LinkDB
All DBs
Position
4:complement(16474428..16486863)
Genome browser
AA seq
1182 aa
AA seq
DB search
MNKEETKFSVLCSLFNWMQRSKTSALKRSKFRKFLDNFCKAGDYFSAIRLILPSLDRERG
SYGLKESVLATCLIDALGMSRDSDDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGL
SSGGLTIKELNDLLDRLASGENRAEKTSILSTLVQKTNAQEMKWIVMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKAVRPQLAMRVGDATGAW
KKFHGKEVVVECKFDGDRIQIHKNGTEVHYFSRNFLDHSEYGHAMSDIIIQNVQADRCIL
DGEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDKQLCYVAFDILYVGDTSVIHESLKGR
HELLQKVVKPLTGRLEILVPNGGLNTHRSSGEPCWSLIVHTLDDVERFFKETIENRDEGI
VLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAER
PVANTYPRRFVSFCRVGTGLSDEELDAVATKLKPYLRKYDYPKKAPPSFYEVTNHSKERP
DVWVESPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRIRYDKPWHECLDVQSFIELV
DSGNGTTQKGTDYGGQQDDKKKHKRSSKKEEKRNLSLVPSHLVQTDVSGVKEDSLIFSKM
MFYFANVPPTHSLDSLHKIVAENGGTFSMNLNNSVTHCVAADSKGIKYQAAKRQGDVIHL
SWVLDCCSQKKLLPLQPKYYLFISDSSKKKLEEEIDEFSDPYFWDLDLADIKQLLSNVPR
SEDTKRINYYKKKYCPMEKWSRFHGCCIYFNSSIHSLKPDWEVVLGVTVRRLKIEVLMGG
GRVCDNLADATHLVLLSIQGCDVGFESLLQSLTEAEKHFLHSKRLHIVGLQWLEDSLEKN
KRLHEESYSLKPYGWEEFNIEECKPDMVLEEAPCDNVEIQKVPSLSNKWKNRGNAAQENY
GILGAPGKRKRGRPAGTNTNRGKTGATQARRTRARIGRKPAKISGNESDESGSHDRTSFK
EEINIAEGNHGMVGDGGSDMQRNEAIKDSTSLQSGKAAEQEVAGDIRFDGHSDKIPEIEM
IEKHNGQDRAKPEKLEFMADPVQAMLFDLIPSLGKKNVQTMNVSTEDEKPPVDLNPSPGM
KNVQTTHTSTEDEKPPFDMGAEPPKKKKVSYKDLASQLLKDW
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggaggagaccaagttcagtgtgctgtgcagcctcttcaattggatgcaacga
agcaaaacgtcagccctaaagcgctccaagttccggaaattccttgacaacttctgcaaa
gcaggggattacttcagcgcaatccggctgattcttccgagcctcgatcgggagcgcggt
agctatggccttaaggagtcggtgctcgccacctgcctcatcgacgctctcggcatgtcc
cgagactccgacgacgctcttcgcctcatcaattggcgcaagggcggcgccaagaccggt
gccaatgccggcaatttcgccctcgtcgccgccgaggtgctgcaacggagacagggactt
agttcaggtggactaacgattaaggagttgaatgacttgcttgatcgtttggcatccggt
gaaaatagggcagagaagacttcaattctttctactttggtacagaagacaaatgcacaa
gaaatgaagtggatcgtcatgatcattcttaaagatctcaaattgggaattagtgaaaag
agcatcttccatgaatttcatccggatgctgaagacttgtttaacgttacctgtgacttg
aaattggtttgtgaaaagctgagggacagaagtcaacgacataaacgacaggacattgaa
gttggaaaagctgtgcgcccgcagctagctatgagagttggtgatgcaactggtgcatgg
aaaaagtttcatggaaaggaagttgttgttgagtgtaaattcgacggcgatcgcatccaa
attcataagaatggaaccgaagtacattacttctcaaggaattttcttgatcactctgaa
tatggacatgcaatgtcagacattattatacaaaatgttcaggctgataggtgtattctt
gatggtgagatgttggtctgggacacatctctgaagcgttttgctgagtttggttcaaat
caagaaatagcaaaggcagcgagggatggacttgacagtgataaacagttgtgctatgtt
gcattcgatatcctttacgttggagatactagtgtaattcacgagagcttgaagggaagg
catgagcttctccagaaagtagtgaagcctttgacgggtcgtttagagattttagtaccc
aatggtggccttaacactcaccgttcttcaggggaaccttgttggtccctaattgttcat
actctggatgatgtcgagaggttttttaaagaaaccatcgagaacagagatgaggggatt
gttttaaaggatcttggttctaaatgggaacctagtgatcgtagtggaaaatggttgaaa
ttgaagccggattacatacgggctggttctgatctggatgttcttataataggaggatac
tatggttcaggacgtcgtggaggggaagtagctcagttcttggtgggtcttgctgaacgt
ccagttgcaaatacatatccgagaaggtttgtatccttttgcagagtgggtactggactt
tctgacgaggagttagatgctgtggcaaccaaattaaagccttatttaaggaagtatgac
taccccaaaaaggcaccaccaagtttttatgaagtaacgaaccattcaaaagagagacca
gatgtttgggttgaaagccctgagaaatcaataatcctttccataacaagtgacatccga
accataaggtccgaggtttttgctgcaccatacagcctgagatttccacgtattgatcga
attagatatgataaaccttggcatgaatgccttgatgtgcaatcatttatagagcttgta
gattcaggcaatggtaccacacaaaaggggacagattatggtggccagcaggatgataaa
aagaaacacaagagatcctctaaaaaggaagagaaaagaaatctatctcttgttccctct
catttagttcagactgatgtttctggtgtcaaggaggacagcttaatattttcaaaaatg
atgttctactttgctaacgtgcctccaactcattctcttgattccttgcacaaaattgtt
gctgagaatgggggtactttttcgatgaatttgaataactcagtcacacactgtgttgca
gctgatagcaaagggattaaatatcaggcagcaaaacgtcagggagatgtgattcatttg
tcttgggtcttggattgttgttctcaaaagaaactccttcctttacagccaaagtactac
ctcttcatttctgactcttcaaagaagaagttagaagaagaaatagatgagttttctgac
ccgtacttctgggaccttgaccttgcagacattaagcagcttctaagcaatgtgcctaga
tcagaggataccaaacgtatcaactattacaagaaaaaatactgtcctatggagaaatgg
tctcgatttcacggctgctgcatttactttaactcatcaattcattccttgaaaccggat
tgggaagttgtgttaggagttacagtaagaaggttaaagattgaagttctcatgggtggt
ggcagagtctgtgacaatcttgctgatgccacccatttggtactcttgtcaattcagggg
tgcgatgtcggattcgaatccttattgcaaagtttgactgaagcagagaaacactttttg
catagcaaaaggttgcatattgttggactgcaatggttggaagacagcttggaaaagaac
aaaagactgcatgaggaatcatatagtttaaaaccctatgggtgggaagaattcaacatc
gaagagtgcaaacctgacatggttttagaagaagctccctgtgacaatgtggaaatccag
aaggttccttctctttctaacaaatggaaaaacagaggcaatgcagctcaagaaaactat
gggatcttgggcgcacctggcaaaaggaaaagaggaagaccagctggcacaaacacgaac
agagggaaaacaggtgccacgcaagctcgaagaacacgtgcacgtattggcaggaagcct
gctaaaatatctggcaatgagtcagatgaaagtggttctcatgatcgtacgtcatttaag
gaagagattaatatcgcggaagggaatcatgggatggtaggtgacggaggttcagacatg
caaagaaatgaggcaataaaagattctacatcattacaaagtggtaaggcagctgaacaa
gaggttgctggagacattagattcgatggccattctgataaaattcctgaaattgaaatg
attgagaagcataatggccaagacagagctaagccagagaaactcgaatttatggctgat
ccagttcaagccatgttgtttgatctgattccaagtcttggaaaaaagaatgttcaaact
atgaatgtgagtactgaggatgagaagccacccgtagatctgaatccaagtcctggaatg
aagaatgttcaaaccacgcatactagtactgaggatgagaagccaccgtttgatatgggt
gcagagcctccaaagaaaaagaaagttagctataaggatcttgctagtcagctacttaag
gattggtaa
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integrated database retrieval system
