Rosa chinensis (China rose): 112202419
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Entry
112202419 CDS
T06020
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112202419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112202419
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112202419
Spliceosome [BR:
rcn03041
]
Complex A
U2 snRNP components
U2 related factors
112202419
Complex B
112202419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
112202419
NCBI-ProteinID:
XP_024199198
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All DBs
Position
5:47435896..47441610
Genome browser
AA seq
1138 aa
AA seq
DB search
MEEGKHKSRKEGESKRSHRDRDREKESNKQKHRDKDRDKRDRGARRSEKEKSYDSEERYD
KEKHRDKDSDRARSRDDERKKTRERKRDNNKEKDKEREGEKDKEKEKRERVREKEREGER
DKERERERERREREREVEDRVREKREHERENDKDRERRIRERERHRDADTDDIDDHVRDR
DRKRHRNDKNEYKETERERSSSRVKTHMDNGDESPQKKSDEDSVQKPTREEELENEQRKL
DEEMEKRRRRVQEWQELKRKKEEDERDHGEGHVDEPMSRKTWTLEGESDDEEVHPSGTSE
PGTNLNGEGNLIDKEDGDFMVDSDNETAALALPNGADNASGDEETDPLDAFMNSMVLPEV
EKLGSAADASISDAKNDKKDGRSNGEQQRRGFNKSMGRIIPGEDSDSDFGDLENDDNVLE
DENDDEFIKRVKKTKAEKLSLVDHSKIDYEPFRKIFYIEVKEISRMSPEEVGACRKQLEL
KIHGKDVPKPIKTWHQTGLTSKILEIIKKMNFEKPMPIQAQALPVVMSGRDCIGVGKTGS
GKTLAFVLPMLRHIKDQPPVEAGDGPIGLIMAPTRELVQQIHSDIKRFAKVLGLRCVPVY
GGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTFLVMDEADRMFDMGFE
PQITRIVQNIRPGRQTVLFSATFPRQVEVLARKVLDKPVEIQVGGRSVVNKDIMQMVEMR
QENERFLRLLELLGEWNEKGKILIFVQSQDKCDALFRDLLRHGYACLSLHGAKDQTDRES
TISDFKSDVCNLLIATSVAARGLDVKELELVINFHVPNHYEDYVHRVGRTGRAGRKGCAI
TFISEEDARYAPDLVKALELSEQVVPDDLKSLADNFMAKVTQGLEQAHGTGYGGSGFKFN
EEEDEVRRAAKKAQAKEYGFEDDKSDSEDEDEGIRKAGGDISQQAALAQIAAITAASKAS
TASMQTPASATQPLPNGGLSVSLPGVLGQALSGTASVFPGTGLPLASNDGAARAAAIAAA
MNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETWGAISDWTGAAITTRGQYF
PPGKVAGPGDRKLYLFIEGPTEQSVKRAKSELKRVLEDISNHAFSLPGGAQQGRYQVI
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggaagagggcaaacataagtcgaggaaggagggagaatccaagaggagtcaccgagat
cgggatcgcgagaaggagagcaataaacagaaacacagggataaagatagagataagaga
gaccgtggcgctcgacgttctgagaaagagaagagttatgattctgaagaaaggtatgat
aaagagaagcatcgagacaaggacagtgatagggcgcgtagccgagatgatgaaagaaag
aaaacaagagaaaggaagagggataacaataaagagaaggacaaggagagggagggggag
aaagacaaagaaaaggagaagagggagagggttagagagaaggaaagagaaggagaaaga
gacaaggagagggagagggagagggagagaagagaacgagaaagagaggttgaagatagg
gtgagagagaagagggagcatgagagggaaaatgataaagatcgagagaggaggataaga
gagagggagaggcatagggatgctgataccgatgatattgatgatcatgttagggatcgt
gataggaagcggcataggaatgataaaaatgagtacaaggagacagagcgggaaaggagt
agtagtagggtaaagacacatatggataatggagatgagagcccacaaaagaaaagtgat
gaagattcagttcagaagccaacccgtgaggaggagttagagaatgaacaaaggaaattg
gatgaggagatggaaaaacgaaggaggagagttcaggagtggcaagagttaaagagaaag
aaggaagaagatgagagagatcatggggaagggcatgttgatgaacctatgtccagaaag
acctggactcttgaaggagaatctgatgacgaagaagttcatccctcagggacatcagag
ccaggtacaaacctcaatggagaaggcaatcttattgacaaagaagatggagatttcatg
gtagattctgacaacgaaacagctgcacttgctttaccaaatggagctgataacgctagc
ggggatgaggagactgatccgttagatgcttttatgaattctatggtattgcctgaagtt
gaaaagctgggcagtgctgcagatgcatcaatatctgatgcgaagaacgataaaaaggat
ggtcgaagtaatggtgaacagcagaggagaggttttaataaatctatgggaagaattatt
cctggggaggattcggattccgattttggggaccttgagaatgatgacaatgttttagaa
gatgaaaatgacgacgagttcatcaaaagggtgaaaaaaacaaaagctgagaaactttct
ttagttgatcactctaagatagattatgaaccattccgcaaaattttttatattgaggtg
aaggagatctcaaggatgagtccagaagaggtgggtgcatgccggaaacaattggaattg
aagatacacggtaaggatgtgcctaagcccattaagacctggcatcaaactggacttacc
agtaaaattttggaaataataaagaaaatgaactttgaaaagcctatgccaattcaggct
caggcattacctgtagttatgagtggtcgagactgcatcggcgttgggaaaactggatca
gggaaaacccttgcatttgtcttgccaatgctgaggcatatcaaggatcagccacccgta
gaagctggagatgggcctattgggcttataatggcaccaacgagggaacttgttcagcag
atccacagcgatattaaaaggtttgccaaggtactgggtctcaggtgtgtgcctgtatat
ggaggttctggtgttgctcaacagattagtgaattaaagcggggtgctgaaattgttgta
tgcacacctggtaggatgattgacatactttgcacaagtggagggaaaataacaaatctg
cgtagagtaacttttttggtcatggatgaagctgatcgaatgtttgacatgggttttgaa
cctcaaatcactagaattgttcaaaatattcggccaggtcgtcaaactgttttgttttca
gccactttccctcgccaggttgaagtcttggcgcgtaaagtgttggacaaacctgtggaa
atacaggttggtggcaggagtgttgtgaataaggacataatgcaaatggttgaaatgagg
caggaaaatgaaagattcctgagattgttagagttgctcggtgaatggaatgagaaaggt
aagattttgatatttgtccagtcccaggacaaatgtgatgctttgttccgggatctgctt
aggcatggatatgcttgtctctcacttcatggggccaaagatcaaactgatcgtgagtcc
acaatatctgattttaagagtgatgtttgtaatttgttgattgcaacaagtgttgctgcc
agaggattagatgtcaaggagcttgaactggtgatcaactttcatgtcccaaatcattac
gaggactatgtacaccgtgttggacgtacaggccgagctggccggaaaggatgtgctata
acgtttatctctgaggaagatgctagatatgctccagatcttgttaaagcattggaactt
tctgagcaagttgttccggatgacctgaaatctcttgctgataatttcatggcaaaagta
actcagggactcgagcaagcccatggaactggttatggaggaagtggttttaaatttaat
gaggaggaagatgaagtgaggagagcggcaaagaaagctcaggctaaagaatatggtttt
gaggatgacaagtctgattcagaagatgaagatgaaggtatccgaaaggcagggggcgac
atttctcagcaggctgcccttgctcagatagcagctattactgctgcctccaaagctagt
acagcctcaatgcagacccctgcctctgctacccaaccgcttcccaacggtggactgtct
gtttctcttccaggtgtccttggtcaagcattatcaggaacagcatcagttttccctggg
actggtttgcctcttgctagcaatgatggggcagctcgggctgctgcgattgctgcagcc
atgaacttgcagcataacctggcaaagattcaagctgatgcaatgcctgaacattatgaa
gcagagttggagataaatgattttcctcagaatgctagatggaaggttacccataaggaa
acttggggtgccatatcagattggactggagcggccatcaccaccaggggtcagtatttc
ccacctgggaaggttgcaggacctggagatcgcaagctctacttgtttatcgagggccct
actgaacagtctgtcaagagagctaaatcagagttaaagcgggttttggaagacatctca
aatcatgcattctcacttcctggtggagctcagcaaggcagatatcaagttatataa
DBGET
integrated database retrieval system
