Rosa chinensis (China rose): 112202746
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Entry
112202746 CDS
T06020
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112202746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112202746
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112202746
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112202746
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112202746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
112202746
NCBI-ProteinID:
XP_024199516
LinkDB
All DBs
Position
5:2370060..2376010
Genome browser
AA seq
949 aa
AA seq
DB search
MELSRENPRPLAFPVTKPMPDLTPKPPPPPPTTTPIIDRYKVLLKQRDDDLRVSPEDDVS
PPSTEEIVQLYEMLLSELVFNSKPIITDLTIIAGEQRDHGKGIADAICARILEVPVEHKL
PSLYLLDSIVKNIGRDYVRYFSSRLPEVFCEAYRQVHPNQHSAMRHLFGTWSAVFPPSVL
RRIEAQLQFSPQVNQQSSGLPPLRASESPRPAHGIHVNPKYLRQLETSDVDNQVGPQRLS
STGNMSHTDFPVGSNRIQPSSTVRLARSSSPSNIGLDEYEVENSPKRFGDRASPSNSVYD
YRAIRDEEPNERRRKHYLDGSQNRLNNGLEHQRPRALIDAYGKDSGDRSLNDKPLHVGRL
GVNGLDHKATSMSWQNTEEDEFDWKSVGPPITEHTRSNDFLPSNIPPSRSYRASPGLGTL
NASSLDSDIGSSWSTQAYLPSEQSSVVAEDPAPPLSFTRGFAGRFQSEINHNQGSRHPQE
PWNMPFHPSQHSQTLLNSKEIGRNFHMPGMSLGGEKVSTDADVRLHGPTSRIGSGADFVN
ADSRLVIPMSVGLRPPVNVHNSHPPPLHPIFPLQNQRSQYGFINSVDTAKNQGPYKSMYM
PEQQLDGYENKDLGLAKLSQLTSQNARLIPVNQRNQAQVSPFQPQFHPHQEPPYSVGPRG
YNLQGQGGTGIANPVPRLQLGLPTHYTPNTNLRGDSLPPLPPGPPPPMQGVFPGQKAGPV
VSSNQQGSSYTGLISSLMAQGVISLTNPSGLQDSVGVEFNADLLKVRHESAITALYYDLP
RQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVTTSMWLSGAEALGTDAV
PGFLPADTIAEKKSDEELAVPADEDQNSCALCGEPFDDFYSDETEEWMYKGAVYLNAPHG
STPDMDRSQLGPIVHAKCRPESTDVSPGGFGQDEGGTIEEGSQRKRLRS
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggagctttcccgagaaaaccctagacccctcgcttttccggtcaccaagcccatgccc
gacctcactcccaagccgccgcctccgccgccgaccacgactccgattatcgaccgctac
aaagtcctgctcaagcagcgggacgacgacctcagggtctcgcccgaggacgacgtgtcg
ccgccgagcaccgaggagattgtgcagctctacgagatgctcttgtccgagctcgtgttc
aattcgaagccgatcattaccgatctcactatcatcgccggcgagcagcgagaccacggc
aagggcatcgccgacgccatctgcgctcggattctcgaggtcccagttgagcacaagctg
ccttcgttatatcttttagacagtattgtaaagaacattggccgagactatgtcagatac
ttctcttcccgtctacctgaggtcttctgcgaggcatacaggcaagttcaccccaaccag
cattctgccatgcgccacctctttggcacttggtcggcagtgtttccaccttcagtcctt
cgcaggattgaagcgcagctgcagttttctccacaggtaaaccagcaatcatcaggttta
cctcctttgagagcatctgaatctcctcggccggctcatggcatccatgtcaatccaaaa
tatttacgtcagttggagacctcagatgtggataatcaggttggacctcaaagattaagc
tcaacaggaaatatgagtcatacagattttcctgttgggtccaatcgtatacagccatct
tcaactgtcagacttgcaagatcttcttcaccttcaaatattggccttgatgaatatgaa
gtagaaaattctccaaaaaggtttggtgaccgggcttctccatctaattctgtgtatgat
tatagagcaatcagagatgaggagccaaatgaaaggcggagaaaacattatcttgatggt
agtcagaaccggttaaataatggacttgaacatcaaagaccaagagctttgattgatgca
tatggaaaagacagtggagatagaagtttaaatgataagcctttgcatgttgggcggctt
ggtgtaaatggtctagatcacaaagcaacttcaatgtcatggcagaatactgaggaggat
gagtttgattggaaatctgttggcccacctataaccgagcacactaggagtaatgatttc
ttgccttcaaatataccaccttctagaagctacagggccagccctggcctcggaacactg
aatgctagctccttagattctgatattgggagtagttggtctactcaggcatacctacct
tccgagcagtcctctgtagttgctgaagatccagcccccccgctttcttttactcgtgga
ttcgcgggtagattccagtccgagataaatcataatcagggttctcgccaccctcaagaa
ccctggaatatgcctttccatccctctcagcattcacagactcttcttaattccaaagaa
ataggtagaaatttccatatgcctggtatgtctctaggtggtgagaaagtgtctactgat
gccgatgtgcgacttcacgggccaacatcaagaattggttctggtgctgactttgttaat
gctgactctcggttagttataccaatgtcagtgggtttaaggcctccagtaaacgtgcac
aattctcacccgccgcctttgcaccctatttttccattgcaaaaccagaggagtcagtat
ggtttcataaattctgtcgatactgctaagaatcaaggtccatataagtctatgtatatg
cctgagcagcagttggacggttatgaaaacaaggatttggggttggcaaagctaagtcag
ttgactagtcagaatgccagactcatacctgttaatcagcgaaaccaggctcaggtcagt
cctttccaaccacaatttcatccacatcaggagccaccttattcagtgggaccacgtgga
tacaatttgcaagggcagggtggtactggtattgcaaatcctgtacctcgtctacagttg
ggcttaccaactcactataccccaaacactaatttgcgtggggactccttgccacctcta
ccacctggcccccctcctcccatgcaaggtgtatttcctggtcaaaaggctggtccggta
gtctctagcaaccagcaagggagttcatatactggtttgattagttctctaatggctcaa
ggtgtgatctcattgacaaatccaagtggactgcaggattctgtaggagttgagtttaat
gcagaccttcttaaggtacgtcatgaatctgcaataactgctctgtattatgatctccca
agacaatgcacaacctgtggtctccggttcaagtgccaagaggagcacagtagtcatatg
gattggcatgtgacaaagaacaggatgtctaaaaaccgtaagcagaagccctctcgtaag
tggtttgtaactacaagcatgtggctcagtggtgcagaggctttgggaactgatgcagtt
cctggctttttacctgctgacaccattgcggaaaagaagagtgatgaagaattggctgtt
cctgctgatgaggatcaaaattcatgcgcgttatgtggagagccttttgatgatttttat
agtgatgagacagaggagtggatgtataaaggtgctgtgtacttgaatgcacctcatggg
tcaacaccagacatggataggtcacaattaggtcctatagtgcatgccaaatgcaggccg
gagtccactgatgtatcccctggaggttttggacaagatgaagggggaactattgaagag
ggtagtcaaagaaaacgtttgcggagttga
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