Ruegeria conchae: K3740_09440
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Entry
K3740_09440 CDS
T08595
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rcon
Ruegeria conchae
Pathway
rcon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3740_09440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcon03400
]
K3740_09440 (mfd)
Enzymes [BR:
rcon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3740_09440 (mfd)
DNA repair and recombination proteins [BR:
rcon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3740_09440 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
SecA_DEAD
AAA_30
AAA_16
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UWR05009
LinkDB
All DBs
Position
complement(1899245..1902700)
Genome browser
AA seq
1151 aa
AA seq
DB search
MKAPNHVTVGGAPEGFDAQLVLNEIVRSGGPVCHVARDDKRMEAMRAALAFFTPHMPVFV
FPGWDCLPYDRVSPNADISAARVATLAALVHQMPVQFVLLTTLNAATQRVPARAILREAA
FTARVDQRIDEEALRNFLVRMGFTQSPTVMEPGDYAIRGGIIDIFPPGESGPVRLDLFGD
VLDGARRFDPVSQRTTEKLDVVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEA
VSAGRKHQGIEHWLPFFHEKLETLFDYLPGATVSLDDQVTPARLARWDSIADQYETRKLA
LENRSRLDTVYKPTPPGLLYLDDAAWEKAVGDRRVLQFSPLPQASGPGVIDAGGRIGRNF
APERQQESISLFGALASHITDKMDKGPVLIASYSEGARERLTGLIEDEGLAEAIPVTDGT
RVGKRGLHLAVWALEHGFETPDLTVIAEQDVLGDRLIRQPKKRRKAENFLTETQSLSPGD
LVVHVDHGIGRYMGMEVVTAAGAAHECLLLEYAEQSKLYLPVENIELLSKYGHDEGLLDR
LGGGAWQAKKAKLKERIREMADKLIRIAAERALRKAPVMDPPPHAWEEFSARFPYQETDD
QLRAISEVMEDMHSGAPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAIVAPTTLLARQ
HAASFKERFRGFPLEVRQLSRFVSAKEAQQTRDGLARGTVDIVIGTHALLAKGIRFNNLG
LLIIDEEQHFGVSHKERLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPIDRL
AIRTYVSEFDAVTIREALLREHYRGGQSFYVVPRISDLPEIEEFLKEQLPELTYVVAHGQ
MAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVG
RSKTRAYAYLTTKPRARLTATAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGYELYQSMLEEAIAKIKAGEMEGLSDADDQWAPQINLGVPVLIPEDYVPDLDVR
LGLYRRLSSLSTKVELEGFAAELIDRFGTLPKEVNTLMLVVRIKAMCKRAGIAKLDGGPK
GATIQFHNDKFASPQGLVEFIQNQRGLAKVKDNKIVVRRDWKKDSDKIKGAFAIARDLAE
KVMAEKKKAKA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctccgaaccacgttacagtcggcggtgctcctgaagggtttgacgcacagctg
gtgctgaatgagatagtccgctcgggtggtccggtctgtcatgtcgcgcgcgatgacaaa
cggatggaggcgatgcgggcggcgctggctttttttacccctcacatgccggtgttcgtt
tttccgggctgggattgcctgccttatgatcgtgtgtcgcccaatgcggatatctcagct
gcgcgcgtggcgacattggctgcactagtacatcagatgccagtgcagtttgtgctgttg
acgacgcttaatgcagcaacacagcgggttccggcccgcgcgattctacgcgaggccgcg
tttaccgcccgcgtagatcagcgcatagatgaagaagcgctgaggaactttctggtgcgc
atgggcttcacccaaagcccgactgttatggagcccggagattatgcgatccgcggtggt
atcattgatatctttccaccgggcgaaagtggcccggttcggctggacctgttcggagat
gttctggatggcgcgcgccggttcgatcctgtctcgcagcgcacgacagaaaagcttgat
gtggtcgagcttgccccagtgtccgaagttattctggacgaagccgccatcacccgattt
cgccagaactaccgcatcgaattcggcgcagcgggcacggatgacccgctgtatgaggcc
gtcagcgctggccgtaaacatcagggtatcgaacactggttgccgttctttcatgaaaag
cttgagacgctgttcgattacctgccgggcgcgacagtctcacttgatgatcaggtcaca
ccagcgcggttggcgcggtgggattcgattgctgatcagtatgagacgcgaaagctggca
ctggaaaaccgctcgcgcttggatactgtgtataaacctacgcctcctgggctgctttat
ctggacgatgctgcatgggaaaaggcggttggcgaccggcgagtgttgcagttcagcccg
ctgccgcaggccagcggaccgggtgtgattgatgcaggtggtcggatcgggcgaaacttt
gccccggaacgccaacaggaaagcatcagcctatttggtgctctcgccagccacatcacc
gataagatggacaaaggtccggtcctcatcgcctcttattcagaaggcgcgcgtgagcgt
ctaaccggtttgatcgaggacgaaggtctcgccgaggcgatcccagtgaccgatggcaca
cgagttgggaagcgcgggttgcatctggccgtttgggcattggagcatggatttgaaacg
cctgatttgacggtgatcgctgagcaggacgtgctgggtgaccgtttgatccgccaaccc
aagaaacgccgcaaggccgagaactttctgaccgagacccaatccctcagccccggcgat
ctggtggtgcatgtagaccacggcattggtcgctacatggggatggaggtcgtcaccgcc
gccggtgctgcgcatgaatgcctgctgctggagtatgcggaacagtcaaagctctatctg
ccggttgaaaacattgagttgctgtcgaaatacggccatgacgaggggctgctagatcgt
ttgggcggtggcgcgtggcaagccaagaaggccaagctgaaagagcgcattcgcgagatg
gcggacaagctgatccgcatcgcggctgagcgtgctttgcgcaaggccccggtgatggac
ccgccaccccatgcgtgggaggagttcagcgcgcgtttcccgtatcaggagaccgacgat
cagttgcgtgccatttccgaggtgatggaggacatgcactccggcgcgccgatggatcgc
ctgatttgcggcgatgttgggttcggcaagaccgaagtcgccatgcgcgcagcctttgtc
gcagccatgtcaggcgtgcaggtcgccatagttgcgccgaccacgttgctcgcacgccaa
cacgcagcgtccttcaaggaacgcttccggggcttcccgctggaggttcggcaattatcg
cgctttgtgtcggcaaaggaggcgcaacaaacccgcgacgggctggcacggggcactgtg
gatatcgtgatcggaacacatgcgctgttggccaaagggatacggttcaacaatctgggt
ctgctgatcatcgatgaggaacagcatttcggcgtgagtcacaaagaacggttgaaacag
ttgcgctcggacgtacacgtcctgaccctgaccgcaacgccgatcccgcggacgctgcag
ttgtctctgaccggagtgcgcgatctgtcgatcattggcaccccacccatcgatcgcctt
gccatccgcacctatgtcagcgagttcgatgccgtcaccattcgcgaggcgcttctgcgt
gagcattatcgaggtgggcagagcttctatgtggtcccgcgtatttcggacctgcccgag
atcgaggaattcctcaaagaacagctgccggagctgacctatgtggtcgcccatgggcag
atggcagctggtgagctggatgacaggatgaacgccttctacgacggcaagtacgacgtg
ttgctggcgaccacgattgtcgaaagcgggttggatatcccgaccgccaacacgatggtg
gtgcatcgcgcggacatgttcggcctcgcacaactctatcagatccggggtcgagtgggg
cgttcgaaaacccgcgcttatgcctatctgaccaccaaaccgcgcgcacgtctgacggca
acggccgagaaacgcctgcgggttctgggctcattggatacgctgggggctggatttacg
ctggcatcacaggatttggatattcgtggggccggtaatctgctgggtgaagagcagtct
ggccagatgcgcgacgtaggctatgaactctatcagtcgatgctggaagaggcgattgcc
aagattaaagccggcgagatggaagggctgtcggatgccgacgaccaatgggccccgcag
atcaacctaggtgtcccggttctgatccccgaggattacgtgcccgatcttgatgtgcgc
cttggtctctatcgccgcctgtcgtcattgtcgacgaaggtcgagctggaaggcttcgct
gctgaattgatcgaccgtttcggcactttgccgaaagaggtgaatacactgatgctggtc
gtacgtatcaaggcgatgtgtaaacgggcagggattgccaagctggacggtggacctaaa
ggcgcgacgatccagttccataatgacaagttcgcttcccctcaggggttggtcgagttc
atccagaaccagcgtggattggccaaggtcaaggacaacaagatcgttgtccggcgcgat
tggaaaaaggacagcgacaagatcaagggcgcgtttgcgatcgcgcgcgatctggccgaa
aaggttatggctgagaagaaaaaggcaaaagcctag
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