Rhodococcus coprophilus: NCTC10994_01747
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Entry
NCTC10994_01747 CDS
T06666
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rcr
Rhodococcus coprophilus
Pathway
rcr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC10994_01747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcr03400
]
NCTC10994_01747
Enzymes [BR:
rcr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC10994_01747
DNA repair and recombination proteins [BR:
rcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC10994_01747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
GDE_C
Motif
Other DBs
NCBI-ProteinID:
SQI30806
UniProt:
A0A2X4TTQ1
LinkDB
All DBs
Position
1:complement(1918925..1921198)
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AA seq
757 aa
AA seq
DB search
MPTRTVDGHRITLTNTDKVLYPKTGTTKGDVIAYYEAVADAMLPHVAGRAGTRKRWPNGV
DEPAFFEKNLAEHAPSWIDRRTLHHKQRSVTYPLFDSAASLVWLGQQAALELHVPQWRFD
RDHAGPATRIVFDLDPGPGAGLPECAVVARYVRDTVAELGWTAYPVTSGSKGIHLYVPLD
RILSTSGASTVAKQVATNLAAAYPDLVTATMSKSVRPGKVFVDWSQNNGAKTTVAPYSLR
GREEPWVAAPRAWDELDDPNLRHLRFEEVLDRLGESGDLLEGLDPPLDTRPASDALASYR
SKRDASRTPEPVPRSVARDGSGDRFVIQEHHARRLHFDLRLERDGVLASWAVPKNLPDSP
GHNHLAVHTEDHPIEYLTFHGTIPKGEYGGGTMTIWDTGTYETEKWREDEVIVRLHGKRI
DGRYALIRTEKDQWLAHRMKEQSSTSHASTFPRDIAPMLATPGEVAGLDAERWAFEGKWD
GYRAVAEVCGGELRLHSRSGRDITREYPPLAALADVLEGHDVVLDGEIVAVDPDGVTSFS
RLQQGVKAEYRVFDILYLDGVSLLRKTYDDRRRVLDALAAATGGLLVPGQLPGDGAEALR
RSRDARWEGVIAKRRDSVYLPGKRGSAWIKEKNWQTQSVVIGGYRKGQGSRSATFGSLLL
GVFDDDGLVYAGKVGTGFDERTLTELANSMEGMETSTSPFFDEVPRPERRDAVWLHPELV
GEVRFQGWTDGGRLRHTSWQGLRDDLDPASVRRESPY
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgccgacacgcacagtcgacgggcatcggatcactctcaccaatacggacaaggtgctg
tatccgaagaccgggacgacgaagggtgacgtcatcgcctactacgaggcggtcgccgac
gcgatgctcccgcatgtcgccggccgggccggtacgcggaaacgctggcccaacggcgtc
gacgaacccgcgttcttcgagaagaacctcgccgaacatgccccgtcgtggatcgaccgg
cgaacgctgcaccacaaacaacgcagcgtcacctatccacttttcgattcggccgcgagc
ctcgtctggctcggacaacaggccgctctcgaactccatgtgccgcagtggcgtttcgac
cgcgaccacgccggccccgccacccggatcgtgttcgacctcgacccggggcccggcgcg
ggcctgcccgaatgcgctgtcgtggcccgttacgtccgcgacaccgtcgccgaactgggc
tggacggcctatccggtcacgagcggcagcaaaggaatccacctgtatgtgccgctcgac
cggatcctgagcacgtccggggcgtcgaccgtcgccaagcaggtcgcgaccaacctggcg
gccgcgtaccccgatctcgtcaccgcgacgatgtccaaatcggtgcggcccggcaaggtg
ttcgtcgactggagccagaacaacggagcgaagaccaccgtcgcgccgtattcgctgcgc
ggtcgcgaggagccgtgggtggcggcgccccgcgcatgggacgagctggacgacccgaac
ctgcggcacctccgattcgaggaggtgctcgaccgcctcggcgaatccggcgacctgctc
gaaggtctcgacccgccactcgatacccgccctgcgtccgacgccctcgcctcgtatcga
agcaagcgcgacgcgtcgcgcactcccgaacccgttccgcgaagtgtcgcgcgcgacggt
tccggcgacaggttcgtcatccaggaacaccacgcccggcggctgcatttcgacctccgg
ctcgagcgtgacggcgtcctcgcctcgtgggcggtcccgaagaacctgcccgacagtccc
ggccacaaccacctggccgtccacaccgaggaccacccgatcgagtacctcaccttccac
ggcacgatcccgaaaggtgaatacggcggcgggaccatgacgatctgggacaccggcacg
tacgagacggagaagtggcgcgaagacgaggtcatcgtgcgcctgcacggaaaacggatc
gacggacgctacgcgttgatccgcacggagaaggaccaatggctggcgcaccggatgaag
gagcagtcgtcgacctcccacgcatcgacgttcccgcgcgacatcgcaccgatgctcgcc
accccgggcgaggtggccgggctggacgccgagcgctgggcgttcgaaggcaagtgggac
ggctatcgcgcggtcgcggaggtgtgcggcggcgagttgcgtctgcacagcagatcgggt
cgcgacatcacgcgggaataccccccgctcgctgcactcgcggatgttctcgaagggcac
gacgtggtgctcgacggagagatcgtggcggtcgatcccgacggagtgaccagtttctcg
cgtctgcagcagggggtgaaggccgagtaccgggtgttcgacatcctgtatctcgacggg
gtgtcgttgctgcgcaagacatacgacgatcgccgccgggttctcgatgccctcgcggcg
gcgaccggcggtttgctcgttcccggccagttgcccggcgacggcgcggaagcgctccgt
cgcagcagggacgcgcgatgggaaggcgtgatcgccaagcggcgagactcggtgtacctg
ccgggaaaacggggcagcgcctggatcaaggagaagaactggcagacccaatcggtcgtc
atcggtggttaccggaagggacagggaagccgatctgcgactttcgggtcgctgctgctc
ggggtgttcgacgacgacggcctggtctatgccgggaaggtcggtaccggcttcgacgag
cgcaccctcaccgaactggcgaattcgatggagggcatggagacctcgacgagcccgttc
ttcgacgaggtgccccgtccggagcgacgagatgcggtgtggttgcacccggagctggtc
ggcgaagtgcggttccaggggtggaccgacggcggccggttgaggcacaccagctggcag
ggtctacgcgacgacctcgatccggcgtcggttcgcagagaaagcccgtactga
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integrated database retrieval system
