Rhizobium croatiense: PYR68_00825
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Entry
PYR68_00825 CDS
T09286
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rct
Rhizobium croatiense
Pathway
rct03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PYR68_00825 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rct03400
]
PYR68_00825 (ligD)
Enzymes [BR:
rct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PYR68_00825 (ligD)
DNA repair and recombination proteins [BR:
rct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PYR68_00825 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Glyco_hydro_65C
Motif
Other DBs
NCBI-ProteinID:
WET74114
LinkDB
All DBs
Position
159727..160776
Genome browser
AA seq
349 aa
AA seq
DB search
MTKPPRKPSQPLLGDAEAPIRSRPRKKRDPAQPQLTLDPMPARIDPCLALLKPKPPKGRQ
WAFEVKWDGYRLAVHIEPKGVRILTRGGHDWTDRFPAIMAAAKRLPVSTAILDGEAVVFD
EQGRSDFGRLQQSLGGRGGNRSSREAVMMAFDLLYFDGHDLMETEFTARRHLLEGLVPAG
GEEAIRLSEEIEADGETLLRIACEHGLEGIIAKDRNSTYRSGRGGEWLKIKCIQSDGFAI
VGYQRSSSAFGNIGALLLAARREGQLVYVGSVGTGFKASQALELRAAMDKIKVSAPAVRY
SGQRKNLIWIKPKLVAEIEYRAWTHDGKLRHPSYKGRRDEQDGAAVCEI
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagccgcctcgcaagccttcccagccgctgctcggtgatgcggaagcgccgatc
cgcagccggccgcggaagaagcgtgatccggcccagcctcaacttacgctcgatccaatg
ccggcgcgcatcgatccctgcctcgctctcctcaagccgaagccgccgaaaggccggcag
tgggctttcgaggtgaaatgggacggttatcgcctggctgtccacattgagccgaagggc
gtccgcatcctgacgcgcggcgggcacgactggaccgatcgctttccggcgatcatggcg
gctgcaaagcgccttcctgtctccaccgcgatattagatggcgaagccgtggtgttcgac
gagcagggccggtcggacttcggcaggctccagcagtcacttggcggccgcggcgggaat
aggtcatcccgggaagcggtcatgatggcgttcgatctactctatttcgacggccatgat
ctgatggagacagaattcaccgcgcggcgccatctcctcgaggggttggtgcctgccggc
ggcgaagaagccatcaggctatccgaggagatcgaggcggatggggagacgctgctgcgc
atcgcctgcgagcatgggcttgaaggcatcatcgcgaaggaccggaacagcacctatcgc
agcggtcgaggcggcgagtggctgaagatcaaatgcatccagagcgacggcttcgccatt
gttggctatcagcggtccagctcggcgttcgggaatatcggcgcgctgctattggccgcg
cggagggagggccagttggtctatgtcggatcggtcggaaccggctttaaggcaagccag
gcgctggagcttcgcgctgcgatggacaagattaaggtgtcagcgcccgcggtgagatat
tccggccagcgcaagaacctgatctggatcaaaccgaaactcgtcgccgagatcgaatat
cgtgcatggacacatgacgggaagctgcggcacccgtcatacaaggggcggagggatgag
caggatggcgcggcggtttgcgagatctga
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