Rhizobium croatiense: PYR68_14180
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Entry
PYR68_14180 CDS
T09286
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rct
Rhizobium croatiense
Pathway
rct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYR68_14180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rct03019
]
PYR68_14180
Enzymes [BR:
rct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PYR68_14180
Messenger RNA biogenesis [BR:
rct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PYR68_14180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
AAA_22
Flavi_DEAD
Snf7
Motif
Other DBs
NCBI-ProteinID:
WET76041
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All DBs
Position
2837239..2838915
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AA seq
558 aa
AA seq
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MVRSGDSHCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSPL
RINVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDIAVASGEPPANIGNSGPRRGNGNGNNRNRGGGHGRE
GQGRGEGRGDANRSEHRGSRQERRPRPERTGRNEDFRGQRRGEAAPDLGPDNDLVSTSDF
RPSAKPQRPAHHGAHANGEPSGHHRGNNRHAHGRPARKHGEDRGQHQAQGGEPRREGNGG
NRRGGSGSRNGGQRRERA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgatagtcattgtggcgccccgaaaggttatgccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgccaccttgtttcagctcggcatcgaaacg
ccgacgccgatccaggaacaggccatccccctcctcctgcagggccgagacctgattggt
cttgcccagaccggcaccggcaagactgccgccttcggcctgccgcttatcgaaaagctg
cttgccgatgagcgtcgacccgacaaccgcacgacgcggacgctgatcctggcgccgacc
cgcgaactggtgaaccagatcgccgacaatctgaagaaattcatccgcaaatcgccgctg
cgcatcaatgtcgtcgtcggcggcgtctccatcaacaagcagcagcttcagctggaaaaa
ggcaccgatgtcctggtcgccacccccggccgcctgctcgatctcgtcaatcgccgcgcc
atcaccctgaccacggtgcgctatctcgttctcgatgaagccgaccagatgctcgatctc
ggcttcgtgcacgatctgcgcaagatcgccaagctggtgccgaagaagcgccagaccatg
ctgttttcggccaccatgccgaaggcgatcgccgatctcgccggcgaatatcttgtcgat
ccagtcaaggtcgaagtcacacctccgggcaaggctgccgacaaggtcgagcagtatgtg
catttcgtcgccggcaagaacgacaagaccgaactgctgcgcaagtcgctgaccgaaaac
cccgacggccgcgccatcgtcttcctgcgcaccaagcacggtgccgagaagctgatgaag
catctcgacaatatcggctactccgtcgcctcgatccacggcaacaagagccagggccag
cgcgagcgggcgctgaaggcctttcgtgacggcagcatcaagacgctgatcgccaccgac
gttgccgcccgcggcatcgacattcctgccgtcagccacgtctacaactacgacctgccg
gaagtgcccgacgcctatgtccatcgcattggccgcacggcgcgcgccggccgcgacggc
atcgcgattgccttctgtgctcccgacgaagccaagctgctgcgtgatatcgagcgcctg
atgggcatcgacatcgcagtcgcaagcggcgaaccgccggccaatatcggcaatagcggc
ccccgccgcggcaacggcaatggcaacaaccgcaaccgcggtggcggccatggtcgcgaa
ggccagggtcgcggcgaaggccgtggcgatgcgaaccgctcggaacatcgcggcagccgc
caggaacgccgcccgcgtcccgaacgcacaggccgcaacgaggacttccgcggccagcgc
cgcggcgaagcggccccggacctcggccccgacaatgatctggtctcgacctccgacttc
cgcccctcggcaaagccgcagcgtcccgcacatcacggcgctcacgccaatggcgagccg
agtggacatcaccgcggcaataaccgtcacgcccacggtcgccctgcccgaaagcacggc
gaagaccgcggccagcatcaggcccagggcggcgaaccacggcgcgagggcaatggcggc
aatcgccgcggcggctccggctcccgcaatggtggccagcgccgcgaacgcgcctga
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