Ricinus communis (castor bean): 8263716
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Entry
8263716 CDS
T01087
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03013
Nucleocytoplasmic transport
rcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8263716
03015 mRNA surveillance pathway
8263716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8263716
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
8263716
5.6.2.5 RNA 5'-3' helicase
8263716
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
8263716
mRNA cycle factors
Common to processing body (P body) and stress granule
8263716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
Helicase_RecD
nSTAND3
ATPase
AAA_16
PhoH
SRP54
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
8263716
NCBI-ProteinID:
XP_002528794
UniProt:
B9SS25
LinkDB
All DBs
Position
5:29012455..29025498
Genome browser
AA seq
1280 aa
AA seq
DB search
MDSEQSNLYETASQPDTGTDAYTFLEFNTQGESDFDYPEFRSPVAWPTPSDSLAAATSSS
SAVDPTASDHRGAAAAATSSDHHSADSAAAASSPVSSSSSSKAMRGGSNSQGVVEGIVSA
MGGLNFEETGDEDGYEFGKGDFTEHACRYCGVSNPACVVRCNIPSCRKWFCNSRGNTSGS
HIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCL
NVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPD
ATLEDLEKPGIDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWD
IGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALEL
RASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQNV
RNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQG
QVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSE
LHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQV
LIDESTQATEPECLIPLVLGAKQVILVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGV
KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMG
QEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGAL
RQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVIL
GNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGI
VSNDNFGSGASSSPNSDRRSSRGRGSYMPPGPPNGTHKPSVHPTGFPMPRVPVPPFHGGP
PSQPYAIPTRGAVHGPVGAVPHVPSPGSRGFGAGRGNAGAPIGSHLSHQQSTQQTIGNMG
STFNFPALENPNSQPSVGGPLSQPGYVNNMPVQGPSQSFRDGFSVGGMSQDFLGDDFKSQ
GSHVPYNVADFSTQASQSGYAVDYVTQGVQGGFPGNFMNQNSQAGFSRFGSGNDFMSQDY
MTHGSQGLFTQIGFNDASQDDVSQNHFGIANPNPLQSQGLMNSLYSQPFAHYNTQPLNMQ
STQQPQQGQGSQNQKIHYNG
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atggactctgagcagagcaacctgtacgaaacggcgtcgcagccagacacgggaacagac
gcatacacatttctcgaattcaacacacaaggcgaatctgactttgattatccagaattc
cgttctcccgtagcatggccaacgccgtcggattctctagcggctgcgacttcctcttcc
tccgccgtggaccctaccgcgtcagaccacagaggcgcagctgcggcggcgacatcctcg
gatcaccactctgctgattctgcagcagcagcttcttcacccgtgtcgtcttcgtcttca
tcgaaagcgatgcgaggcggcagcaatagtcaaggggtggtggaagggatagtgagtgca
atgggagggttgaatttcgaggagacgggagatgaggacggatatgagtttggaaaaggg
gattttacagagcatgcttgtcggtattgtggggtttccaatcctgcttgtgttgttcga
tgcaatattccttcttgtaggaagtggttttgtaattccagaggcaatacttctggctcc
catattgttaatcacctggttcgtgcaaaacataaagaagtctgtcttcataaagacagt
cctttaggagaaacaatacttgaatgttacaactgtggatgccgaaatgtcttccttctt
ggatttatatcagcaaagacagaaagtgttgttgttctcctatgtagggaaccttgcttg
aatgtcaatgcattgaaggacatgaactgggatttgagccagtggtgcccccttattgat
gatagatgttttctacagtggcttgttaagataccttctgaacaggagcagctgagggca
cgccaaattagcgctcagcaaataaataaagtagaagaactttggaaaacaaatcctgat
gctaccctagaagatcttgagaaacctggcattgatgatgagcctcagtctgtagcattg
aagtatgaagatgcatatcagtatcaaaatgtttttgctccattgattaagcttgaggcc
gattatgataaaatgatgaaagaatctcaaagcaaggacaatgttactattcgatgggat
attggccttaacaagaagcgaattgcttattttgtttttccgaaggaggacaatgagttg
cgtcttgtacctggtgatgagttacggttgcgttattctggagatgctgcccatccagca
tggcagtcagttgggcatgtgatcaagttaactgcacaggaggaggtagcacttgagctt
cgtgctagtcagggagttcctgtagatataaaccatggcttcagtgttgattttgtgtgg
aagagtacaagctttgatcggatgcaaggtgcaatgaaaacttttgcagtcgatgaaaca
agtgtcagtgggtacatataccaccatctgttgggccacgaggttgaaaatcaaaatgtt
cgtaatacacttccacgtcgttttggtgctcctggtctcccagagctgaatgcatctcaa
gtgtttgctgtaaagagtgttcttcaaagacctataagcttgattcaagggccacctggc
actggaaaaactgtcacttctgctgccattgtttatcacatggccaagcagggccaggga
caggttttggtatgtgctccaagtaatgtggctgtagaccaactagctgagaagatcagt
gctactggtttaaaggttgttcggctatgtgcaaaatcaagggaagctgtaagttccccc
gttgagcatctaacccttcactatcaggttagacatcttgacacttctgaaaagagcgaa
cttcacaagttgcaacaattgaaagatgaacaaggggaactgtccagcagtgatgagaaa
aaatacaaagcactgaagcgagcaacagagagggagatttcacaaagtgccgatgtcatt
tgttgcacctgtgttggtgctggagatccccgtctagcaaattttaggttccgccaggtg
ctcattgatgagtctacgcaggcaacagagcctgagtgccttattcctttagttcttggg
gcaaagcaggtcattcttgttggagaccattgccagcttggtccggtcattatgtgcaag
aaagcagctcgtgctgggctggctcagtccctttttgaacgtcttgttttacttggtgtt
aaaccaattaggttgcaggttcaataccgtatgcatccatccctttcagaatttccatct
aacagcttttatgaaggtacgcttcaaaatggtgtgactgtcaatgagaggcaatcatca
ggaatcgattttccttggcctgtgcctaatcgtcctatgttcttctatgtccagatggga
caagaggaaataagtgccagtggaacatcttatctaaatcgtactgaggcagcaaacgtt
gaaaaaattgtaactactttcttgagaagtggtgtggtccctagccagattggtgtgatt
acaccatatgaggggcagagagcgtatattgtgaactatatgtcaagaaatggtgctctt
agacagcaattgtacaaagaaattgaggtcgcaagtgttgattcatttcaaggaagggaa
aaagactacattattttgtcctgtgttaggagtaatgaacatcagggtattggatttctt
aatgatccacggaggctgaatgttgctctaacacgtgctagatatggaattgtcattttg
ggaaatcctaaagttctgagcaaacaacctttgtggaacagcctacttacacactacaag
gagcacgagtgcttggttgaaggacctttaaataacttgaagcaaagtatggttcaattt
caaaagcccaagaagatctataacgataggagactcttctttggtggtggccctggaatt
gtctctaatgacaattttggttctggtgcatcatccagcccaaactctgatagaagaagc
tctcgtggcaggggttcgtatatgccacctgggccacccaatggtacccataagcccagt
gtccaccctactggcttcccaatgcctcgggttcctgttcctccatttcatggtggtcca
ccttcccaaccatatgctattccaactcgtggggctgtgcacgggcctgttggagctgtt
cctcatgttccttcaccaggaagtcggggttttggtgcagggcgggggaatgctggtgct
cctattggcagtcatctttcccaccagcaaagcacacagcaaactattggaaatatggga
tccacattcaactttcctgctctggagaatccaaacagccagccatctgtgggtggtcca
ttatctcagccgggatacgtgaataatatgccagtccaaggtccaagtcaatcatttcgt
gatggattttctgtgggaggcatgtctcaggacttcctgggtgatgatttcaaaagccag
ggatctcatgttccttataatgttgctgacttctccactcaggcatcacaaagtggatat
gctgttgactatgttacacaaggagtgcagggtgggttccccggcaactttatgaatcag
aattctcaagctggattttctcgttttggttctggaaatgatttcatgtctcaggattac
atgactcatggatcacaggggctgttcactcagattggcttcaatgatgcctcgcaggat
gatgtgtcacagaaccactttggcatagccaatccaaaccctcttcagtctcagggtttg
atgaactctctttattctcagccctttgcccactacaacacacagcctctaaatatgcag
tctacacagcagcctcagcagggtcaaggctcccagaaccagaaaatccactacaatggt
tga
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