Ricinus communis (castor bean): 8265541
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Entry
8265541 CDS
T01087
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8265541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8265541
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8265541
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8265541
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
8265541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
8265541
NCBI-ProteinID:
XP_002523201
UniProt:
B9SAX8
LinkDB
All DBs
Position
4:complement(21578198..21588619)
Genome browser
AA seq
702 aa
AA seq
DB search
MDDTDGGLSFDFEGGLDSSGPTNPTASIPAIPSDNTAAVAAATNNSIVPNVSSNDPASAA
AAAANNQAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDC
VYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLNSYNYGSSNK
FFQQRGAGFQQHADKSQFSQGPNNMGQGMAAKPPGTESANVQQPQQQQPQPGQGQQSQQQ
ATQTPTQNLPNGQPNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAK
LNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIGASVGGGNWKYAHGTAHYGRNFSVKWL
KLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSVGGQLACLLYDEPDSELMAISLAAE
AKREEEKAKGVNPENGGDNPDIVPFEDNEEEEEEESEEEEESFGQALGAPGQGRGRGRGI
IWPHMPLARGARPIPGMRGFPPMMMGADSFSYGPVTPDGFGMPDLFGVAPRGFTPYAPRF
SGDFTGAASGMMFPGRPPQPGGVFPNGGFGMMMGPGRAPFMGGMGPNSTNPLRGNWPGGM
PFPPLPTPSPQRPVKRDQRMTANDRYSTGSDQGRNTAGEPDDEARYQQEGLKASHEDQFG
AGNSFRNDESESEDEAPRRSRHGEGKKKRRGSEGDATPGSDH
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggatgatacagatggtggtctcagcttcgattttgaaggaggtttagactcctccggg
cccacgaaccccaccgcctccatccccgctattccttccgacaataccgccgccgtcgcc
gccgctaccaacaattctatcgtccctaatgtctcttccaatgacccagcctcagcagca
gctgccgctgcaaacaatcaggcagggcggcggagcttcagacagacagtctgccggcat
tggctccgtagtctttgcatgaagggtgatgcttgtggattcttacatcagtatgataaa
tcgcgaatgccagtttgccgcttttttaggctttatggggagtgcagagagcaggattgc
gtctataagcatactaatgaggatatcaaagagtgtaatatgtacaaactagggttttgt
ccgaacggtcctgattgccggtataggcatgctaagttacctggacctccacctcctgtg
gaagaagtccttcagaagattcagcaactaaattcttacaattatggatcctcaaataaa
tttttccaacagaggggcgctggttttcagcaacatgcagataaatctcagttctcgcaa
ggtcccaacaatatgggtcaaggaatggcagcaaaaccccctggaacagaatcagctaat
gtgcagcagcctcagcagcagcaaccgcaaccgggacaaggacagcagtctcaacaacaa
gccactcagaccccgacacaaaatcttccaaatggacagcccaatcaggctaacagaact
gcaattcctttgcctcaaggaatatctaggtattttatcgttaaaagttgcaatcgtgaa
aatctggaattatctgtccaacaaggagtttgggcgactcaaaggagcaatgaagctaaa
ctgaatgaagcttttgactctgctgaaaatgtgattttaattttttcagtcaatcgaact
cgacatttccagggatgtgcaaagatgacatccaaaattggtgcttctgttggtggtgga
aattggaaatatgcacatggaactgcacattatggacggaatttttctgtcaaatggttg
aagttatgtgaattgtcattccacaaaactcgccacttgaggaacccatacaatgagaac
ttaccagtgaagatcagtagagactgtcaagagctagagccctcagttggcgggcagtta
gcttgcttactttacgatgagccagacagtgaactcatggcaatctcgcttgcagccgaa
gcaaaaagagaggaggaaaaagcaaagggagttaatccagaaaatggaggtgataaccca
gacattgtgccatttgaagacaatgaagaagaggaagaggaagagagcgaggaggaggaa
gagagctttggccaagcccttggagcaccaggtcaagggcgagggagaggcagaggcatc
atatggcctcacatgccactggcccgtggtgctagacccatccctgggatgcgaggattt
ccccccatgatgatgggtgctgacagcttttcttatggaccggtgactcctgatggcttt
ggaatgcctgatctttttggcgtggcacctcgcggatttaccccatatgcccctaggttt
tctggtgattttacaggtgcagcatctggtatgatgtttcctgggcgacctccccaacct
gggggtgtgtttccaaatggtggatttgggatgatgatgggtccggggcgggcccctttt
atgggtggaatgggccccaactctacaaatccacttcgagggaattggccaggtggtatg
ccatttccgccacttcctacaccatccccacaaagacctgttaagcgagatcaaaggatg
acagccaacgatcgatatagtacaggttccgatcaaggcaggaatacagctggggaacca
gatgatgaggcacggtatcaacaagaaggattaaaggcttcccatgaagatcaatttggt
gcaggaaacagctttagaaatgatgagagtgaaagtgaagatgaggcaccaaggagatca
aggcatggggaagggaagaagaagagacgaggctcggaaggcgatgcaactccgggctct
gatcactaa
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