Ricinus communis (castor bean): 8266812
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Entry
8266812 CDS
T01087
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8266812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8266812
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8266812
Spliceosome [BR:
rcu03041
]
Complex C
Other components
Step II factors
8266812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
IBR
DEAD
AAA_22
HA2_C
SLS
AAA_19
zf-RING_2
zf-C3HC4_2
zf-C3HC4
HA2_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
8266812
NCBI-ProteinID:
XP_048231754
LinkDB
All DBs
Position
6:complement(17837656..17845098)
Genome browser
AA seq
1726 aa
AA seq
DB search
MIPSSNHHHQYPSRHRQFRPPPHLVRQLHQRVFILKLFLNHHRSSSNNSGNRSTALIDSI
VSQCNPKPFKSNTRPGSGTLVATLVFHHQIDALNAFVFLWEKRLLGDHLFTPILDFGVNE
ETNEKVRNLFQLHVQKLLESGVLENLELKVNELSLELDKVSDLLKKPKGLKAFSEIEVKK
KRLVDERYGMIRRIEEFKFGVKCVIDYLERREVDDDDDEENQLRVLGFKNGKGCRWSKLH
FLLLRECQRLEDGLPIYGFRREILKQIHSHQVIVLIGETGSGKSTQLVQFLADSGVASSG
SILCTQPRKIAAISLAKRVDEESIGCYEDNSIVCFPTYSSAQWLDSKVIYMTDHCLMQHL
MRDKTLSGVSCIIIDEAHERNMNTDLVLALIRELLIDRRDLRLVIMSATVDATKLSEYFF
GCETFHVLGRTFPVEIKYVPGASEGSSGCSPGANNIAPYVSDVVKMAMEIHQVEKEGSIL
AFLTSQLEVEWACEKFESPSAIALALHGRLSHEEQCRVFQNYPGKRKVIFATNLAETSLT
IPGVKFVVDSGLVKESRFEPTSGMNVLRVSKISQSSANQRAGRAGRTEPGKCYRLYPEFD
YQSMAFHQEPEICKVHLGIAVLRILSLGIKNVLEFDFIDAPSAEAVDAAIRNLVQLGAVT
CKNGTFELTMDGHYLVKLGIEPRLGKIILDSCRHGLRKEGVVLAAVMANASSIFCRIGTN
DDKLKSDCLKLQFCHQDGDLFTLLTVYRAWEGISPDNRNKWCWNNSINAKTMRRCKETVL
DLENCLKNELSIVIPTYWVWNPYVVTEHDRHIKKIILSSLADNIAMYSGYDRLGYEVVLS
GEYFQLHPSCSLQVYGQKPNWVVFAELLSASSQYLVCVTGIDFDSLSTISPPLFDISKMQ
SKKLQLSVIKGFGLTALKRFCGRSNISLLSLLSRIQAEFMDKRIGIEISVDNNEILLYAS
VEHMEKVYDLVNDALEYELKWLSNECLEKCLYHGGRAGASPPVALFGAGAEIRHLELENK
FLSIDVFLSDESSLNDKVILTFFEKSVSGVCGVHKFAGSRLDADHVEKWGRLTFLTPEAA
RKALEFNGFNLSGSILKLSPASAASGHKVSSFAAVKAKVTWPRRYSKGYAIVRCERNEAA
FVVQDCFNLLIGGRLVYCELSTKDIDCIVIKGLDRDTSEQEILEVLQMATNRRILDVFLI
RGDTVNNPPLGACEEAILKEIAPFMPNQIPLSNYCHVQVFPPEPKDTFMKAWITFDGRLH
LEAAKALQHIQGKVIAGCFSWQKIWCQRVFHSSVSCPAPVFPFIERQLNSLLKRFTHRPG
VHYSLERNENGSYRVKVSANATKTVAELRRPLEQLMNGKKVDQGRLTPAVLQLLFSRDGR
FLMKTLQQEMGTYVLFDRQNLSVRIYGPENKVALAEEKLIRSLLTLHDKKQLDIPLRGGV
MPHDLMKKVVEKFGPDLHGLKEKFPDAVFTLNAKRHIISFHGKEDLRLRVENIIHDFARA
LNVNGSAEQPDLEATSCPICLCEVEDCYQLEACAHKFCRSCLVDQLESAMRGRDGFPVSC
AREGCGVAIWLTDLKSLLPCDKLEDLFRASVGAFVASSGGTYRFCPSPDCPSVYRVADTG
TFGGPYVCGACYTETCTRCHLEYHPYVSCERYKEFKDDPDLSLKDWCRGKDHVKSCPVCG
YIIEKVDGCNHIECRCGKHICWVCSEFFSSSDDCYGHLRTIHLAII
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgattccctcctccaaccaccaccatcaatatccttcccgccaccgtcaattccgccct
cctccccatctcgtccgccaactccaccaacgtgtgtttatactaaaactcttcttaaat
caccaccgtagcagtagcaacaacagcggcaaccgtagtacagctttaattgactcgatt
gtttcacaatgtaatccgaaacccttcaaatccaacacaagaccaggtagtggtactcta
gtggctacacttgtatttcaccaccaaattgatgcgcttaatgcttttgttttcctttgg
gaaaaacgtttgttgggtgatcatttatttactcctatacttgattttggtgttaatgag
gaaactaatgagaaagtcaggaatttgtttcaattgcatgtacagaagcttctagaaagt
ggggttttagagaacttggagttgaaggttaatgaattgtctcttgaacttgataaagtt
tcggacttgctaaaaaaacctaagggtttgaaagcattcagtgaaattgaagtgaaaaag
aagagattagttgatgaaaggtatgggatgattaggagaattgaggaatttaagtttggg
gttaagtgtgtgatagattatttagaaaggagagaagttgatgatgatgatgatgaggag
aaccagttgagggtattaggatttaaaaatgggaagggttgtaggtggagtaagttgcat
tttcttttgttgagagaatgtcaaaggcttgaagatggtttgcctatatatggatttagg
agggagattttgaagcaaatacattcacatcaggtaatagtcttgattggagagacaggt
tccgggaagagtacccagttggtacagtttcttgctgactctggcgttgcttccagtggt
tctattttgtgtactcagcctcgtaaaattgctgccatttccttggcaaaaagggttgat
gaggaaagcattggttgttatgaagataactcaattgtctgttttccaacttattcatct
gcccagtggcttgattctaaggtaatatatatgactgatcactgtctgatgcagcatctc
atgagagacaagactttgtctggagtttcatgtatcattatagatgaggctcatgaaaga
aacatgaatactgatcttgtcttggccttgattagagaattacttattgataggcgtgat
ctaaggcttgttataatgtctgcaacagttgatgcgaccaaattatcagaatacttcttt
ggttgtgaaacctttcatgtattagggagaacttttccagttgagatcaagtatgttcct
ggtgcctctgaagggtcttctggttgctcgcctggtgctaataatattgctccatacgtc
tctgatgttgttaagatggcaatggagatccatcaagtggagaaggaagggtcaattctt
gcctttttgacttcccagctggaggtagaatgggcttgcgaaaagtttgagtcaccctct
gcaattgcattagcattacatggtaggctttcccatgaagagcaatgtcgtgttttccag
aattacccagggaagagaaaagttatttttgctacaaatttagctgaaacatccttgaca
attccaggggtaaagtttgtagttgattctggtttggtcaaggaaagcaggtttgaacct
acatctggcatgaatgtcctcagagtttccaagattagccagagttctgctaatcaacga
gctggtcgtgctggtcgaacggaacccggcaagtgttaccgactttatccagaatttgat
tatcagtcaatggctttccatcaggaacctgaaatttgtaaagttcaccttggtattgca
gtgcttaggatcctttctctgggtattaagaatgtgctggaatttgattttattgatgct
cctagtgcagaggcagttgatgcggccatcaggaaccttgtgcagctaggtgctgtaacc
tgcaaaaatggtacttttgaattaactatggatgggcattacttggttaagttgggtatt
gagccccgacttgggaaaataattcttgacagctgccgtcatggtttgcggaaggaagga
gttgttcttgctgctgttatggcaaatgcaagcagcatattttgcagaattggtactaat
gatgataaattaaaatcagattgccttaagttgcaattctgccatcaggatggagatctc
ttcacattgcttactgtttacagggcatgggaggggatatctccagataatagaaataaa
tggtgctggaataatagcatcaatgcaaaaactatgcgcagatgcaaagagactgtgcta
gatttggagaactgtttgaagaatgaacttagtatcgttattccgacgtactgggtttgg
aatccttatgttgttacagagcatgacagacatattaagaagataatactttcttcttta
gcagataatattgctatgtattctgggtatgatcgtcttggttatgaggtggttttgagt
ggagaatactttcaacttcatccttcatgttcgttgcaagtgtatggtcaaaagccaaac
tgggttgtctttgctgaactcttatctgcatccagtcaatatcttgtctgtgttactggc
attgactttgatagtttgtccaccattagtcctcctttatttgacatctcaaagatgcag
agtaaaaaattgcagttgagtgtgatcaaaggatttggtcttactgctctgaaaaggttt
tgtggaaggtccaatattagcttgctttctcttctttctcgcatacaggcagaattcatg
gataagcggattggtattgaaatcagtgtggataacaatgagattctattatatgcatct
gtggaacacatggaaaaggtttatgaccttgttaatgatgcattagaatatgaattgaaa
tggttaagtaatgaatgcctggagaagtgcttgtatcacgggggacgagctggtgcttct
cccccagttgctctttttggagctggtgcagaaatcaggcacctggaattggagaacaag
tttttgagtatagatgtgttcctttcagatgaaagttctctaaatgacaaggtgatcttg
acattctttgagaaatctgtttctggggtgtgtggtgttcataaatttgcaggcagcaga
ctggatgctgatcatgtggagaagtggggcaggttgacatttcttactcctgaagcagct
agaaaagcattagagttcaatggatttaatttatctggctctatacttaaactgtcccct
gctagtgctgctagtggtcataaagtatcatcatttgctgcagtcaaagctaaagttact
tggccacggaggtacagtaaaggatatgccattgttagatgtgaaagaaatgaagctgcg
tttgtcgttcaagattgctttaatctgctgattggaggaaggctggtttattgtgagctc
agcacaaaggatatagactgcattgtcatcaaaggattggatagagatacttccgaacaa
gaaattcttgaagttctgcaaatggccacaaataggagaattttggatgtctttctgata
cgaggagatactgtaaataatcctcctctgggtgcctgtgaggaagcaattctcaaggaa
attgctcctttcatgcctaaccagatccccttgagcaattactgtcatgttcaggtcttt
cctcctgaaccaaaggatactttcatgaaggcttggatcacgtttgatggaagactacat
ttagaggcagcaaaagcgttgcaacatatccaaggaaaggtaattgctggatgtttttca
tggcagaaaatatggtgccagcgggtttttcatagctctgtatcatgtcctgctcctgtt
tttccattcattgagaggcaactaaattctttgctcaaaaggtttacgcatcgacctggt
gtacattacagtttagaaaggaatgaaaatggctcctacagagtaaaagtatctgccaat
gcaacaaaaacagtagcagagttgaggaggccactggagcagctaatgaatggaaaaaag
gtagatcagggtaggcttaccccagcagttctgcagcttctcttctcgagagatggcaga
tttcttatgaagacactacaacaagaaatgggaacttatgttctctttgaccggcagaac
cttagtgttaggatctatggtcctgagaataaagttgcccttgcagaagagaagttgata
aggtcgcttttaaccctgcatgataagaagcaattagatatccctcttcggggtggagtc
atgccacatgatctcatgaagaaagtggttgagaagtttgggcctgacttgcatgggctc
aaagaaaagtttcctgatgctgtgtttacacttaatgcaaagcgccatatcatctctttt
catggaaaagaggatttgaggcttagagtggagaatataattcatgactttgcacgagct
ctaaatgttaatggatctgctgagcaaccagaccttgaagctactagctgtcctatttgc
ttgtgtgaagttgaggactgttaccagcttgaggcttgtgcacataagttctgccggtct
tgcttggttgaccagttagagtcggcaatgagaggacgtgatggttttcctgtaagctgt
gcacgagaaggttgtggggtggccatttggctcactgatttgaagtctctgctgccatgt
gacaagttagaggacctcttcagggcttctgtgggggcatttgtagcatctagtggtgga
acgtacaggttttgcccctctcctgactgtccttctgtttatcgggtagcagacactgga
acatttggaggtccatatgtatgtggagcatgctacacagagacatgtaccaggtgtcac
ttagagtatcacccgtatgtgtcgtgtgaaagatacaaagagttcaaggacgaccctgat
ttgtcattgaaagattggtgcaggggaaaagatcatgttaaaagctgtccagtatgtggg
tacataattgagaaggtggatggctgcaaccacattgagtgcagatgcggcaaacatatc
tgctgggtctgctcagagttctttagcagcagtgatgactgctatgggcacctgagaact
atacatctagcaattatatga
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