KEGG   Ricinus communis (castor bean): 8269643
Entry
8269643           CDS       T01087                                 
Name
(RefSeq) histone deacetylase 9 isoform X2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03082  ATP-dependent chromatin remodeling
rcu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    8269643
   03083 Polycomb repressive complex
    8269643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rcu03036]
    8269643
Enzymes [BR:rcu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     8269643
Chromosome and associated proteins [BR:rcu03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     8269643
   HDAC complexes
    Sin3A-HDAC complex
     8269643
    BRAF-HDAC complex
     8269643
    REST complex
     8269643
    SHIP complex
     8269643
    MiDAC complex
     8269643
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     8269643
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    8269643
  Chromatin remodeling factors
   NuRD complex
    8269643
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 8269643
NCBI-ProteinID: XP_002529076
UniProt: B9SSV7
LinkDB
Position
8:complement(14403683..14409616)
AA seq 429 aa
MRSKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSTDYVEFLHRIVPDTQHLFANELARYNLGEDCPVFQNLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKDIGEREGKFYAINVPLKDGIDDTSFTRLFKT
IISKVVETYQPGVIVLQCGADSLARDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNDYIEYFAPEYSLKIPGGQIENFNSKSYLSTIK
MQVLENLRCIQHAPSVQLQEVPPDFYVPDFDEDEQNPDERVNQHTQDKHIQRDDEYYEGD
NDHDHNMDV
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgcgttccaaggacagaatctcctacttctatgatggggatgtgggtaatgtttacttt
gggccaaatcatccaatgaaaccacaccggctttgtatgactcatcatcttgttctctcc
tatgacctacacaagaagatggagatttatcggcctcataaggcgtatcctgttgagctt
gctcagttccattcaactgattatgttgaattcttacaccggattgtaccagatactcaa
catttgtttgcgaatgaattggctagatataatcttggagaagattgccctgtctttcaa
aacttgttcgaattttgtcaaatttatgctggtggaacaatagatgctgcacggagatta
aacaatcaactatgtgacatcgctataaattgggcaggtggattacaccatgctaaaaag
tgtggagcatcaggattttgttatatcaatgacttagttttgggtattttagagcttttg
aagtatcatgcacgtgttttgtacattgatatagacgtgcatcatggtgatggtgtcgaa
gaagccttttattttactgacagggtgatgacagtgagttttcacaagtatggggacatg
ttctttcctggaaccggagatgttaaggacataggagaaagagaaggaaagttttacgca
ataaatgtccccctaaaggatggaatagatgacactagcttcacccgacttttcaaaaca
attatatccaaggttgtagaaacgtatcaaccaggtgtgatagttcttcaatgtggtgcg
gattcgttagctagggatcgcttgggctgctttaacctctccattgatgggcatgctgaa
tgtgttaggtttgtaaagaaattcaatttgcctttactggttactggaggtggaggatat
acaaaagagaatgttgctcgatgttggactgtcgaaacaggagttcttttggatacagag
ctacccaatgagatcccagacaatgactatatcgaatattttgcccctgaatattcattg
aagattcctggtggacaaatagagaatttcaatagcaaatcttaccttagcacaataaaa
atgcaagtgctggaaaatcttcggtgcatccaacatgctcctagtgtacagttgcaagag
gttccacctgacttctatgtacctgattttgatgaagatgagcaaaaccctgatgaacga
gtgaatcagcatactcaagataagcatatccagcgggatgatgaatattatgaaggggac
aatgaccatgatcataacatggatgtttga

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