Ricinus communis (castor bean): 8269643
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Entry
8269643 CDS
T01087
Name
(RefSeq) histone deacetylase 9 isoform X2
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03082
ATP-dependent chromatin remodeling
rcu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
8269643
03083 Polycomb repressive complex
8269643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rcu03036
]
8269643
Enzymes [BR:
rcu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
8269643
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
8269643
HDAC complexes
Sin3A-HDAC complex
8269643
BRAF-HDAC complex
8269643
REST complex
8269643
SHIP complex
8269643
MiDAC complex
8269643
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
8269643
Heterochromatin formation proteins
Other heterochromatin formation proteins
8269643
Chromatin remodeling factors
NuRD complex
8269643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
8269643
NCBI-ProteinID:
XP_002529076
UniProt:
B9SSV7
LinkDB
All DBs
Position
8:complement(14403683..14409616)
Genome browser
AA seq
429 aa
AA seq
DB search
MRSKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSTDYVEFLHRIVPDTQHLFANELARYNLGEDCPVFQNLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKDIGEREGKFYAINVPLKDGIDDTSFTRLFKT
IISKVVETYQPGVIVLQCGADSLARDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNDYIEYFAPEYSLKIPGGQIENFNSKSYLSTIK
MQVLENLRCIQHAPSVQLQEVPPDFYVPDFDEDEQNPDERVNQHTQDKHIQRDDEYYEGD
NDHDHNMDV
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgcgttccaaggacagaatctcctacttctatgatggggatgtgggtaatgtttacttt
gggccaaatcatccaatgaaaccacaccggctttgtatgactcatcatcttgttctctcc
tatgacctacacaagaagatggagatttatcggcctcataaggcgtatcctgttgagctt
gctcagttccattcaactgattatgttgaattcttacaccggattgtaccagatactcaa
catttgtttgcgaatgaattggctagatataatcttggagaagattgccctgtctttcaa
aacttgttcgaattttgtcaaatttatgctggtggaacaatagatgctgcacggagatta
aacaatcaactatgtgacatcgctataaattgggcaggtggattacaccatgctaaaaag
tgtggagcatcaggattttgttatatcaatgacttagttttgggtattttagagcttttg
aagtatcatgcacgtgttttgtacattgatatagacgtgcatcatggtgatggtgtcgaa
gaagccttttattttactgacagggtgatgacagtgagttttcacaagtatggggacatg
ttctttcctggaaccggagatgttaaggacataggagaaagagaaggaaagttttacgca
ataaatgtccccctaaaggatggaatagatgacactagcttcacccgacttttcaaaaca
attatatccaaggttgtagaaacgtatcaaccaggtgtgatagttcttcaatgtggtgcg
gattcgttagctagggatcgcttgggctgctttaacctctccattgatgggcatgctgaa
tgtgttaggtttgtaaagaaattcaatttgcctttactggttactggaggtggaggatat
acaaaagagaatgttgctcgatgttggactgtcgaaacaggagttcttttggatacagag
ctacccaatgagatcccagacaatgactatatcgaatattttgcccctgaatattcattg
aagattcctggtggacaaatagagaatttcaatagcaaatcttaccttagcacaataaaa
atgcaagtgctggaaaatcttcggtgcatccaacatgctcctagtgtacagttgcaagag
gttccacctgacttctatgtacctgattttgatgaagatgagcaaaaccctgatgaacga
gtgaatcagcatactcaagataagcatatccagcgggatgatgaatattatgaaggggac
aatgaccatgatcataacatggatgtttga
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