Ricinus communis (castor bean): 8272106
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Entry
8272106 CDS
T01087
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase 29 isoform X1
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcu03009
]
8272106
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8272106
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
Pre-60S particles
Helicases
8272106
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
8272106
NCBI-ProteinID:
XP_002531894
UniProt:
B9T0X5
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All DBs
Position
8:complement(18256598..18263279)
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AA seq
789 aa
AA seq
DB search
MGKAEPLVSSKAELKHKQNLKKKAKSGGFESLNLSPNVYNGVKRKGYRVPTPIQRKTMPI
ILSGSDVVAMARTGSGKTAAFLIPMLERLKQHVSQGGARALILSPTRDLALQTLKFTKEL
GRFTDLRASLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDE
ADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDVDTKIS
PDLKTVFFTLRQEEKYAALLYLVREHISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVC
YGDMDQDARKIHVSRFRAQKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGR
AARAGRTGTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVVKDMDRVMMKINEAVANG
ETIYGRFPQTVLDLVSDRVREVIDSSAELTSLQKTCTNAFRLYTKTKPLPAKESIRRVKD
LPHEGIHPIFKNGLGGGELTALAFSERLKAFRPKQTILEAEGEAAKSKNARGPSSQWVDV
MKRKRAIHEKIINLVHQHRSIQQEDKEVESEIPSSSGKEKKEARGSKRKAKSFKDEEYYI
SSVPTNHHTEAGLSVRANEGFGSNRLEAAVLDLVADDSGGMQKQKTVYHWDKRGKKYIKL
NNGERVTASGKVKTEGGAKVKANKTGIYKKWKERSHRKVSLKGASDEGNAEQTSTFSGDN
RLRGNNRKFKGGKKQNFMPNANVRSEIKSLEQVRKERQKKASQMSHMKSKGAGGKKKFGK
NGKRGKTRK
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagcagaaccattagtaagctcaaaagcagagctaaagcacaagcaaaacctc
aaaaagaaagcgaaatcaggtggcttcgaatccctaaacctaagccctaatgtatacaat
ggagtcaagcggaaaggttaccgtgtccctacacctatccaacgcaagaccatgcctatc
attctctccggctccgatgttgtcgctatggctcgtacgggctctggtaaaacggcagcg
tttttaattcctatgcttgagagattgaaacaacatgtgtctcaaggtggtgctagagct
ctcattttgtcacctactagggacttggctttgcagactttgaaatttactaaagagctt
ggcaggtttactgatcttcgagctagtttattggttggtggtgatagcatggaaagtcag
tttgaggaattagctcagaatcctgatataataattgcaactcctggtaggcttatgcac
catttgtctgaggttgatgatatgtcattacggactgtggaatatgtggtttttgatgaa
gcagatagtctatttggtatgggttttgctgagcagttgcatcaaatccttacccagttg
agtgagaatcgacagaccttgctttttagtgcaactttgccaagtgctcttgctgagttt
gctaaggctggtctaagagatcctcagcttgttcggcttgatgtggatactaagattagc
cctgatttgaagactgtgtttttcactttacggcaagaggaaaaatatgcggcactgcta
tatttggttagggagcacattagttctgaccagcagactttgatttttgtgtccactaaa
catcatgttgagttccttaatattttgtttcgagaagagggtatcgagccttctgtatgt
tacggtgatatggatcaagatgcacgaaagattcatgtatcgaggttcagggcacaaaaa
actatgttgttgattgtaacagatgtggcggctagggggattgatatccccttgcttgat
aatgtcatcaactgggacttccccccaaaacctaaaatttttgtccatcgtgtaggacga
gctgcaagggcaggtcggactggtacagcgttctcttttgtgacatctgaagatatgcct
taccttttggatcttcatctatttctttctaaaccaatcagggctgctccaactgaggaa
gaggttgtgaaggacatggatcgagttatgatgaaaattaatgaagcagttgcaaatggg
gaaactatttatggacgtttcccgcagacggttctcgatctcgtttcagatagagttcga
gaggttattgattcatctgcagaactgacttccttgcagaaaacctgtacaaatgctttt
aggctgtatacaaagacaaaacccttacctgcaaaggagtccattagaagagtaaaagat
ttgccccatgaaggtatacatccaatttttaaaaatggtttgggaggtggtgagttaact
gcactcgcattttctgagcgcttaaaagcatttagacccaaacagactatactggaagct
gaaggtgaagctgctaaatcaaagaatgcgaggggtccttctagtcaatgggttgatgtg
atgaagaggaaaagagctattcatgagaagatcattaatttggtacatcagcatcgttct
atccagcaagaggacaaggaagttgaatctgaaattccttcttcaagcgggaaggagaaa
aaagaagctcgtggttctaaaaggaaagcaaaaagtttcaaagatgaggagtactatata
agttcagtaccaacgaatcatcatacagaggcaggcctttcagttagagctaatgaaggc
tttggatcaaataggttggaagctgctgtcctagatctggttgctgatgatagcgggggc
atgcagaaacagaagactgtataccattgggataagaggggtaaaaagtacatcaaattg
aataatggtgaacgtgttacagctagtggaaaggtaaaaacagaaggtggtgcaaaagta
aaagccaataaaaccgggatatacaagaagtggaaagaacggtcacacagaaaagtctct
cttaaaggagccagtgacgaagggaatgctgagcaaacctcaaccttctcaggagacaat
cgattgcgaggtaataatagaaagtttaaaggtggcaagaagcagaacttcatgcctaat
gctaatgtgcgttcagaaattaaaagtcttgaacaagttcgcaaggagaggcagaagaag
gccagccaaatgtctcatatgaagagcaagggtgccgggggtaagaagaaatttggtaaa
aatggaaagagaggaaagacgaggaaataa
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