Ricinus communis (castor bean): 8275235 Help Entry 8275235           CDS       T01087                                  Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism rcu  Ricinus communis (castor bean) Pathway rcu03030   DNA replication rcu03410   Base excision repair rcu03420   Nucleotide excision repair rcu03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rcu00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     8275235    03410 Base excision repair     8275235    03420 Nucleotide excision repair     8275235    03430 Mismatch repair     8275235  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rcu03032]     8275235    03400 DNA repair and recombination proteins [BR:rcu03400]     8275235 Enzymes [BR:rcu01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      8275235     6.5.1.6  DNA ligase (ATP or NAD+)      8275235     6.5.1.7  DNA ligase (ATP, ADP or GTP)      8275235 DNA replication proteins [BR:rcu03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     8275235  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      8275235 DNA repair and recombination proteins [BR:rcu03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      8275235    NER (nucleotide excision repair)     Other NER factors      8275235    MMR (mismatch excision repair)     Other MMR factors      8275235 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  8275235 NCBI-ProteinID:  XP_002523716 LinkDB All DBs Position 8:15383997..15395668 Genome browser AA seq 796 aa AA seqDB search MLTLRSCNCLRFISFPYHHHHRHHHHSKSLSSSFLIFCNKSSYFHSTLPLFIKSSFKSTM STPRSAFDVLMKKSAANKKSQSSSPKKRKSPDSQIAPKTLINSTQSLQQQPPNTIQHKET PQKPQDSSLSLGEEKKVDTAKKQRLAIAEMKGKIKSLMKNPKDFDPNEVVYWEKGENVPF IFVCSAFEYLEDEKEKGRGNITNVACNMLRSVMSTTPDDLLALVYLLANRVAPAHEGVEL GIGEAMIIKALAEAFGRTEKQVKKEYEGTGDLGRVAQASRSSQSMMRRPEPLTVSKVFNT FQLIAKDSGKDSQDKKKNRIKALLVAATDCEPQYLIRLLQGKLRINLAGQTLLAALGQAA VFSENHCTVPSNIQSPLDEAAKIVKQVYSVLPVYDRIVPALLNDGVWNLPKTCSFTPGVP VGPMLAKPAKSVTEIVEKFQGKFTCEYKYDGERAQIHFLENGSVEIYSRNAERNTGKYPD VVVAISRSKKSSVKSFVLDCEIVAYNRGEKKILPFQILSTRPRKNVVMSDIKVDVCIYAF DMLYLNGKPLIEEQLEDRRKLLYDSFEEDPEHFQFATAITSNDLEEIQKFLDAAVDASCE GLIIKTLDKDATYEPSKRSNNWVKLKKDYIESIGDSLDLVPIAAYHGRGKRTGVYGAFLL ACYNSSTEEFESICKIGTGFSEQVLEERSNSLRAKVVPQPKSYYRYEEKIKPDVWFEPTE VWEVKAADLTISPVHRAAVGIVNSDKGISLRFPRLMRVREDKSPEEATSSDQVADMYNAQ KQNQPKVTQADSDDDQ NT seq 2391 nt NT seq  +upstreamnt  +downstreamnt atgctcacccttcgttcgtgtaattgtttgcgcttcatttcctttccttatcatcatcat catcgtcatcatcaccattccaaatctctgtcttcctcgtttctcatattctgcaataaa tcctcctattttcattctacacttcctctctttatcaaatccagtttcaaatccactatg tctactcctcgctccgcattcgacgttctcatgaaaaaatccgccgcaaataaaaaatcc cagtcttcttctcccaagaaacgcaaatcccctgattcccaaattgcccccaaaacccta attaattccacgcaatctttacaacaacagccgcccaatacaattcagcataaggagacc ccccaaaagccccaggactctagcttatcgctcggtgaagagaaaaaagttgatactgcc aagaaacagcgtttggcaattgcagaaatgaagggaaagattaaatctttgatgaaaaat cctaaagattttgacccaaatgaagtggtttattgggagaaaggtgaaaatgtccctttt atatttgtttgttcagcttttgaatatttggaagatgagaaagagaagggcaggggtaat attacaaatgttgcttgtaacatgttgaggagtgttatgagtaccactcctgatgatttg ttggctctagtttatcttttggccaatcgggttgcgcccgctcatgagggcgttgagttg ggtattggtgaagctatgattattaaggcacttgctgaggcctttgggaggaccgagaaa caagttaagaaggaatatgagggaacaggagatttaggacgggttgctcaagcaagtcgc tcatcacaatctatgatgcgaaggcctgagcctttaacagtttcaaaagttttcaacaca tttcagctgattgcaaaggattctgggaaggacagtcaagataagaaaaagaatcgtatc aaggcacttctggttgcagccaccgactgtgaacctcaatatctcattcgtctacttcag ggaaagttgcgaatcaatttggcaggacagacacttttggctgcattgggacaagctgct gtgttttctgaaaaccattgcactgtgccttcaaatattcagtctcctttagatgaggct gcaaagattgttaaacaagtgtactctgtactccctgtctatgatagaatagtccctgct cttctaaatgatggtgtatggaatctccccaagacatgtagctttacacctggtgtccca gttggacccatgcttgcaaagccagccaaaagtgttactgaaatagtagaaaagttccag ggtaaattcacctgtgaatacaagtatgatggtgaacgtgcccagatacattttctggag aatggttcagttgagatatacagtcgaaatgctgagcggaatactggaaaatatcctgat gttgttgttgcaatttcaagatcaaagaaatcctctgtgaaatctttcgttttggattgt gaaatagttgcctataatcgtggggaaaagaaaattctgccctttcagatccttagcacc cggccccggaaaaatgtggtaatgagtgacatcaaggtcgatgtttgcatatatgccttt gatatgttgtaccttaatggcaaaccacttattgaagaacaactagaagatcgtagaaag ctgctttatgattcatttgaggaagaccctgaacattttcagtttgcaacagcaataaca tcaaatgatctcgaggaaattcaaaagttcctcgatgctgctgttgatgcaagttgcgag ggtttaatcatcaaaacattggacaaggatgctacatacgagccttcgaagaggtcgaat aactgggtaaaattgaagaaagattacatagaaagtattggcgactcgctggatcttgta cctattgctgcttaccatggtcgtggaaagcgtacaggtgtctatggtgcttttcttctt gcttgttacaacagcagtactgaggagtttgagagcatatgtaaaataggcactgggttt tctgaacaagtgcttgaagaacgttccaatagtctgcgcgctaaagtagttcctcaacca aagtcgtactacaggtatgaagaaaaaattaaaccagatgtgtggtttgagcccactgag gtatgggaggtgaaagctgcagatttaactattagtcctgttcatcgtgcggcagttggt atagtgaattctgataagggaatttctctgcggtttccacgtctaatgcgtgtccgggag gacaagtctcccgaagaagccacatcatctgaccaggttgcagatatgtataatgctcag aaacaaaatcagcctaaggttactcaagctgacagtgatgatgaccagtag

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