Ricinus communis (castor bean): 8279553
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Entry
8279553 CDS
T01087
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
8279553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8279553
Enzymes [BR:
rcu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
8279553
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
8279553
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
BRCT
RNA_ligase
DNA_ligase_IV
DNApol3-delta_C
Motif
Other DBs
NCBI-GeneID:
8279553
NCBI-ProteinID:
XP_048227599
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All DBs
Position
3:1486889..1518441
Genome browser
AA seq
1181 aa
AA seq
DB search
MSGNETKFSVMVSLFEWIQKSKYSAKKRSKFRKFLDTFCKPDDYFSAIRLILPSLDRERG
SYGLKESVLATCLVDALAMSRDSPDAVRLFNWRKGGPKTGSNAGHFPLVAFEVLQRRQGT
SSGGLSIKELNDLLDKLASSENRGEKISVLSTLIKKTNAQEMKWLIMIILKDLKLGISEK
SIFNEFHPDAEDLFNVTCDLKLVCEKLKDQSQRHKRQDIEVGKAVRPQLAMRVSDAHSAW
KKLHGKEVVVECKFDGDRIQIHKNGAEIHYFSRNFLDHSEYGHGMSEIIIQNVLADKCIL
DGEMLVWDSSLNRFAEFGSNQEIAKAAKDGLDNERQLCYVAFDVLYVGDTSVIHQSLRER
HDLLRKFVRPVKGRLEILVPDGGLNDHRLPGEPPCSLITYNVNDVKRFFEETVKNRDEGI
ILKDLASKWEPSDRSGKWLKLKPEYIQAASDLDVLIIGGYYGSGRRGGEVAQFLVGLAER
PAPDTYPRRFISFCRVGTGLTDDELAAVVNKLKPYFRKYEYPKMAPPNFYQVTNNSKERP
DVWIESPEKSIILSITSDIRTISSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELV
HSSNGTTQNGKDNKGLQDNKPTSVKSSKKGGRKNASAVPSHFIETDVSGVKEESFIFSKM
MFYFVNVPPTHSLESLHKMVAENGGSFSMNLNKSVTHCIAAESKGIKYQATKLHGDIIHC
SWVLDCCSQKRLLPLQPKYFLFLADSSKKKLQEEIDEFSDSYYWDVDLADMKQLLDSINT
SGDFSSIDYLKRKYGAKDKWSQFHGCSVYFYVSTASFLRTCDWQSLLGLKLRRLKLEVIM
GGGQVTDNLANATHLVALNVPGSSVDFDSLMKSLTVTEKYLLWNKKFYVIGYQWLEDSLE
MQTKLQEDAYSLKPCGLQESNIEEWKYNLDMDNASGNFDVVRNQQQLSSADSQKEDSGGT
SLKHARISSSPKKDAKRKRGGPAGRSVKEGKVGLSQAPRPRSRGRKPVKLCDTGSDENNS
YDDKADEARIQLGKENHEIHAEKKISEIKQIGGEDTESAHIHNIAEKEVTEGNRLQEWDD
KAPDAEIRKRHQNRDFQSDKTHSEIGGRHDVEEKENPDKLEIMVDPIHAMLLDMIPSLGV
RNVEISNQVFEREKPAGDPTAQPVKKKKVSYKDVASEMLKD
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcaacgaaacgaaattcagtgtaatggtgagtctgttcgagtggatacagaag
agcaaatactcggcgaagaagcgttccaaatttcgtaaattcctggacaccttctgcaag
cctgatgattacttcagcgcaattagactaatccttccaagtcttgacagagagaggggc
tcttacggcctcaaagagtctgtactcgccacctgccttgtcgatgctctcgccatgtcg
agagattcccctgatgctgttcgcctcttcaattggcgcaaaggtggccccaaaactggc
tccaatgccggccattttcccctcgtcgcatttgaggtcctccagcgtaggcagggaacg
tcatcaggtggtctaagtatcaaggaattaaatgacttgcttgataaattggcttcgagt
gaaaacaggggagagaaaatatcagttctttctactctgataaagaagacaaatgcccag
gaaatgaagtggttaattatgataattctcaaagatttgaaattgggaattagtgaaaaa
agtatatttaatgaatttcatcctgatgccgaagacttgtttaacgttacatgtgacttg
aaactagtttgtgaaaagttaaaggatcagagccaaaggcataagcgacaggacattgag
gttggaaaggctgtgcgccctcaactagctatgagagttagcgatgcacattccgcatgg
aaaaagctgcacgggaaggaagtagtcgtggaatgtaaatttgatggcgatcgcatacaa
atacataagaatggggcagagatacactacttttcaaggaactttcttgatcactctgaa
tacggacatggaatgtcagagattattatccaaaatgttcttgctgataagtgtatactt
gatggtgaaatgttggtttgggattcttctttgaatcgttttgctgaatttggttcaaat
caggaaatagcaaaggcagcgaaagatggacttgacaatgaaagacagttgtgctatgtt
gcttttgatgttctttatgttggagatactagtgtcattcaccaaagcttaagggaaaga
catgatcttcttcgaaaatttgtgaggcctgtgaagggtcgtttagagattctggtacct
gatgggggtctcaatgatcaccgccttcctggggaaccaccttgttcgctaattacttat
aatgtgaacgacgtgaagagattttttgaggaaactgtaaagaacagagatgaaggcatc
atattaaaggaccttgcatcaaaatgggaaccaagtgatcgtagtggaaagtggttgaag
ctgaaacctgagtacatacaggctgcttctgacttggatgttctcatcattggaggatac
tatggctctggacgtcgtggaggagaggtggctcagttcttggttggcctagcagaacgt
cctgccccagatacatatcccaggcgattcatctccttttgcagagtgggtactggacta
actgatgatgagctagctgctgttgtaaacaaattgaagccttattttagaaaatatgaa
tacccgaagatggcaccaccgaatttttatcaagttactaataattcaaaagagagacca
gatgtgtggatcgaaagccctgagaaatcaatcatactttctattactagtgatattcga
actataagttctgaggtctttgctgcaccatatagcctcagatttcctcgtattgacaga
gtgagatatgacaagccgtggcatgaatgtctcgatgtgcagtcatttgtggaacttgta
cattcaagtaatggtacgacacaaaatgggaaagataacaaaggcttgcaagacaacaaa
ccaacaagtgtgaaatcctccaaaaaaggaggaagaaagaatgcttctgctgttccttct
cattttatagagactgatgtgtccggagttaaggaagaaagcttcatattttcaaaaatg
atgttttactttgttaatgtgcctccaacccactctcttgagtccttgcacaaaatggtt
gctgagaatgggggaagtttctcaatgaatttaaacaaatcagtaacccactgcatagca
gccgaaagcaaggggataaaatatcaggcgacaaagctccatggagatattattcattgc
tcttgggttttggattgttgttcacaaaagaggctcctccctttacagccaaagtacttc
ctctttcttgctgactcttcaaagaagaagctacaggaagaaattgatgaattttctgat
tcttactattgggatgtcgatcttgcagacatgaaacagcttttggacagcataaataca
tcgggagatttcagcagcattgactatttaaagagaaagtacggtgcaaaagataaatgg
tctcagtttcatggctgctctgtgtacttctatgtttcaacagcatcatttttaagaaca
tgtgattggcaatccttgttggggcttaaactgaggaggttgaagcttgaagtcattatg
ggtggtggccaagtgaccgataatcttgctaatgctacccatttggtggccttgaatgtg
ccaggctccagtgtggattttgattctctcatgaagagtttaactgtcacagagaagtat
ctactctggaataagaagttttatgtaattggatatcaatggttggaggactccttggag
atgcagacaaagttgcaagaggatgcatatagcttgaagccttgtgggttgcaagagtca
aatattgaagaatggaaatataatctggatatggacaatgcctctggaaattttgacgtt
gttagaaaccagcaacaattatcatctgctgacagccaaaaagaagacagtggcggaact
tctcttaaacatgctagaatatcgtcttcgcccaagaaagatgccaaaaggaaaagaggg
ggacctgctggcaggagtgtgaaggagggaaaagttggccttagccaagctccaagacct
cgctctcgtggtcgaaagcctgttaaactttgcgacactggatcagatgaaaacaactcg
tatgatgacaaggcagatgaagcaaggatccaactgggcaaggaaaatcatgaaatccat
gcagaaaagaaaatttctgaaattaaacagattggaggagaagatacagaatcagcacac
atacacaatatagctgagaaagaggttactgaagggaatagactgcaagagtgggatgat
aaagctccggatgctgaaattaggaagaggcatcagaacagagactttcagtctgataaa
actcatagtgaaataggtggaaggcacgacgtggaggagaaagaaaacccagataaatta
gaaattatggttgatccaattcatgccatgttattagacatgattcctagcctgggagtg
aggaatgtggaaatttcaaatcaagtttttgagcgcgaaaagccagctggggatcctact
gcacagccagtgaagaaaaagaaagtcagctacaaggatgttgcatctgaaatgctcaag
gattga
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