Ricinus communis (castor bean): 8283403
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Entry
8283403 CDS
T01087
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03013
Nucleocytoplasmic transport
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8283403
09122 Translation
03013 Nucleocytoplasmic transport
8283403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8283403
03041 Spliceosome [BR:
rcu03041
]
8283403
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
8283403
Spliceosome [BR:
rcu03041
]
Complex C
Other components
EJC/TREX
8283403
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
8283403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Haemadin
Motif
Other DBs
NCBI-GeneID:
8283403
NCBI-ProteinID:
XP_002529986
UniProt:
B9SVG7
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All DBs
Position
8:5562371..5570520
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AA seq
608 aa
AA seq
DB search
MEEFKNAILQPGPPENFALQTVQEFIKPQRQTKLAQDENQLLENMLRTLLQELVASAVHS
GEQIMLYGQSVDEGEKSQGQIPRLLDVVLHLCEREHVEGGMIFQLLEDLTEMSTMKNCQD
IFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKDPPAGISVDFNFYKTLWSLQENFCNPAPLTLAPTKWHKFT
SSLMVVLNTFEAQPLSEEEGDANNLEEEAATFNIKYLTSSKLMGLELKDPSFRRHILVQC
LILFDYLKAPGKNDKDSTSESMKEDIRTCEERVKKLLEMTPPKGKDFLQKIEHVLEREKN
WVCWKRDGCQPFEKQPIENKTIQEGSKKRKPRWRLGNKELSQLWKWADQNPNALTDPQRV
RTPAITEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRFSARQDLDGFSRFTDHGIEG
VVPLELLPPDVRSKYQAKPNDRSKRAKKDDIKGGSNQTEENQIATPASEIDGEGIRADEA
AAAPMDTDAMATAGSTSQGGTPTPDERQRQSPDADDGQEAGHLEADGEVEAGMIDGETDA
EVDLEAIS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggaagaattcaaaaacgctatactgcaacctggaccgcctgaaaacttcgctctccaa
accgttcaagaatttattaaacctcagaggcaaacaaaattggcacaagatgagaatcaa
ttattagaaaatatgctccggactttacttcaggagcttgtggcttctgcagtacattca
ggagaacagataatgctatatgggcaatcagttgacgagggggaaaaatctcagggtcaa
attcctcgtcttttagatgttgtgctgcatctttgtgagagagaacatgtagagggtggt
atgatattccagctgttggaagacttgacagaaatgtccacaatgaaaaattgccaggat
atttttggttatattgagagtaaacaagatatactagggaagcaagaattgttcgctcgt
ggaaaacttgtgatgttgagaacgtgtaatcaactccttcgtcgtctttcaaaggcaaat
gatgttgtgttttgcggacgaattctcatgtttctggcacatttttttccattgtctgag
cgttcagcggtgaacataaaaggagtttttaacacatcaaatgagactaagtatgagaaa
gacccacctgcaggcatttctgttgacttcaacttctacaaaaccttgtggagtttacag
gaaaacttttgcaaccctgctcctctaacgcttgctccaactaagtggcataaatttact
tctagtttgatggttgtgttgaatacttttgaagctcagccattgagcgaggaagaagga
gatgctaacaacttggaggaagaggcagcaacttttaacataaaatatctcacaagtagt
aaactaatgggtttagagttaaaagatcctagttttcgacgccacattcttgtgcagtgc
cttatattgttcgactatcttaaggctccaggaaaaaatgataaggattcaacatctgaa
agcatgaaagaagatataagaacttgcgaggagcgtgtaaagaaactacttgaaatgact
ccacccaaaggaaaggatttccttcaaaagattgagcatgtgctagaacgggaaaagaat
tgggtgtgttggaaacgagatggttgccaaccatttgaaaagcagccaatagagaacaaa
actatccaagagggaagtaaaaaacgtaagccaaggtggagactggggaataaagaactc
tctcagttgtggaagtgggcagatcaaaatccaaatgctttgactgatcctcaacgtgtc
cgaacacctgccatcacagaatattggaaacccttggcagaagatatggacccatcagct
ggaatagaagctgaatatcaccataaaaataaccgagtatattgctggaaaggtctgcgg
ttttcagctaggcaggacttagatgggttttcaagatttactgaccatggtattgaagga
gttgtacctctagaacttctgccaccagatgtccggtcaaaataccaagctaaacctaat
gataggtctaaacgtgccaaaaaggatgacataaagggtggatcgaatcaaacagaagag
aatcagattgcaacgcctgcaagtgagatagatggtgaaggaattagagctgatgaagcc
gcagctgctccaatggacactgatgcaatggctacagcaggtagtacttcccaaggtggc
actccaacgccagatgaacgccaaaggcaaagccctgatgcagatgatggtcaggaggca
ggccatttggaagcagacggtgaagtagaggctgggatgatcgatggagagacggatgca
gaagtagatttagaagcaattagctaa
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