Ricinus communis (castor bean): 8284235
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Entry
8284235 CDS
T01087
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8284235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8284235
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8284235
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8284235
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
8284235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
8284235
NCBI-ProteinID:
XP_002518518
UniProt:
B9RXP9
LinkDB
All DBs
Position
5:complement(31282790..31289100)
Genome browser
AA seq
1023 aa
AA seq
DB search
MDSEKILQNPRLNTNSIKPIMPSNDLSQKQPPSLLDRFKVLLKQKEEQARVSMEDDDVAG
TSTLSSEEIVQLYELVLDELTFNSKPIITDLTIIAGELREHGAGIADAICARIVEVPVDQ
KLPSLYLLDSIVKNIGRDYVRHFSSRLPEVFCAAYKQVHPNLHTSMRHLFRTWSTVFPPS
VLSKIESQLQFSSQANNNNHSSGLSSLKASDSPRTTNVIHVNPKYVRLEPSPSENSAQHV
RGASSTLKVHGHKPYIGCDEFDSDHVEVTPSKVGAQRLNTMGNTGPSSFVHGPNRLHPPS
SSRLTRRLSPSRIGAERPLPSEVDDFMAGNSPRRFLEGASPSHPVLDCGPLRSMGRDEET
NEWRRKHYSDDNHKKFEASIAYNLSNGHEHQGPRALIDAYGEDKRKRIPNSKHLQIERLD
VDGTANKVGPRSWQNTEEEEFDWEDMSPTLIDRSRSNGLLLSVPPFGGAGARPGFGTRAA
SRLDSDLRSKQSGQAQLPLVDDSSNITDDTMSLLGPGRGSGGKLSGFQTDRNQTMGSRYP
REAWKSPHHFSQSADLINAKGRNRDLQMPFSGSGISSSGSEILASLVDQLPDADAQIIRP
PTLPSRMSSSTALSSTGVWPLVNVHKSHQPPLRPIFPPQMQSRSLLDPRNASNTAVNQGF
QKSSFLSEQQLNGLESKEHSLTKQPLLPSQHAAMNQQNQGQVNPFQPQRENFPPSVASLP
PHPLAPTFDHRYVTQAHGSAMSRIHSNLVSSMPLPLPVNNIPNTMHLQVGVRPPLPPGPP
PASHMIPIPQNAGPVASNQPAGGAFSGLINSLVAQGLISLKQTPVQDSVGLEFNADLLKV
RHESAISALYADLPRQCTTCGLRFKCQEDHSSHMDWHVTRNRMSKNRKQKPSRKWFVSAT
MWLRGAEALGTDAVPGFLPTEAVVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETEE
WMYKGAVYLNAPSGSTASMDRSQLGPIVHAKCRSESSVAPPEDIRSNEGPDTEEASQRKR
MRS
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggattcggagaaaattcttcaaaaccctaggttgaatactaactcaatcaagcctatc
atgccaagcaatgacctctcgcagaagcaaccaccgtcattgcttgacagattcaaggtt
ttattaaagcaaaaggaagagcaagctagggtttctatggaggatgatgacgtggcaggg
acatcaactcttagcagcgaggaaatagtgcagctttatgagctcgtgcttgatgaattg
actttcaattcgaagcctattattacggatttgacgattatcgctggcgagctcagagag
cacggcgctggcattgctgacgctatttgtgcccgtattgtcgaggttccagttgatcaa
aaactgccttcactatatttattggatagcattgtaaagaacataggccgtgattatgtt
aggcatttttcttcccgtctgcctgaggttttctgtgctgcttacaaacaagttcatcct
aacctgcatacttcaatgcgccacctctttagaacatggtctactgtgtttcctccctct
gtgcttagcaagattgagagtcagttgcagttttcttcacaagctaataataataatcac
tcctctggcttatcttccttgaaggcatctgactctccaaggacaacaaatgttattcat
gttaatcccaaatacgtgcgattggaaccttcaccttcggaaaatagtgctcagcatgta
agaggagcttcttcaactctaaaagtgcatggtcacaaaccttacattggatgtgatgag
tttgattctgatcatgtagaggtcacaccctcaaaggttggagcccaaagattaaacaca
atgggaaatactggtccttcatcttttgtacacgggcctaataggctacatccaccttca
agttccaggcttacaagacgcctgtcaccttcaagaattggagctgagaggcctttgcct
tcagaagttgatgacttcatggcaggaaattctcctcgaaggtttcttgagggggcttct
ccatctcatcctgttttagattgtggacctcttagatccatgggcagagatgaagagaca
aatgaatggagaaggaaacactattctgatgataaccataagaaatttgaagcctctatt
gcgtataatctttctaatggacatgaacatcaagggcccagagctttaatagatgcctat
ggagaagacaaaaggaaaagaattccaaatagcaaacatttgcaaattgaacgcttagat
gtagatggcacagccaataaagtgggtccaagatcatggcaaaatactgaagaggaggaa
ttcgactgggaagatatgagtcctactttaatagatcgcagcaggagcaatggtttgtta
ttatctgttccaccttttggaggggctggggctagacctggctttggaacaagagctgct
tcccgattggactctgatcttaggagcaaacaatctggtcaggctcagctgccactggta
gatgactcctctaatatcactgatgatacaatgtcacttctgggtcctggtcgtggatct
ggaggtaagttatctggattccaaactgatagaaatcagactatgggttctcgctatcct
cgagaagcttggaagtcgccacatcacttttctcagtcagcagatctgatcaatgccaaa
ggaagaaatagggatttacagatgcccttttctggaagtggtatatcctcttcaggaagt
gagattttggcttctcttgttgaccaacttccagatgctgatgctcaaattatcaggcct
ccaactcttccatcaagaatgagctctagtactgcactatcatcaacaggagtatggcca
cttgtaaatgtgcataaatctcaccaacctcctttgcgccctattttcccaccacagatg
cagagtagaagtctgcttgatcctagaaatgctagtaatactgctgtaaatcagggtttt
cagaagtcttcctttttgtctgagcaacagttgaatggtcttgaaagcaaagaacacagt
ttgacaaagcagccactattaccaagtcaacatgctgccatgaatcagcaaaaccagggt
caagttaatccttttcagccacagcgagaaaactttccaccatctgtggcttcgttgcca
cctcacccgttggcaccaacttttgatcatagatatgttacgcaagcgcatggttctgcc
atgagtaggattcattcgaatcttgtgtcttctatgccgttgcctttaccagtaaacaac
atcccaaacaccatgcatttacaggtaggggtccggccacctctacctccaggtcctcct
cctgcttcgcatatgatacccatccctcagaatgctggtccagttgcctctaaccaacca
gcgggcggtgctttttcaggtctgattaattctctggtggctcaaggtttgatatcatta
aagcaaacacctgtacaggattctgtggggctcgagttcaatgctgaccttcttaaggtg
cggcatgagtctgcaattagcgccttgtatgctgatctccctcggcagtgcacaacatgt
ggccttagatttaagtgtcaagaagatcatagcagtcacatggattggcatgttactagg
aaccgaatgtctaagaaccgtaaacagaaaccttctcgcaagtggtttgttagtgcaact
atgtggctcagaggggctgaggcattgggaactgatgcagttcctggttttttacctact
gaggctgttgtggagaagaaggatgatgaagagatggctgttcctgctgatgaagagcag
aatgcatgcgcattatgtggagagccttttgatgatttttacagtgatgaaactgaggaa
tggatgtataaaggggctgtctatctgaatgcacccagtgggtcaacagcgagcatggat
aggtcccagttgggccctatagtacatgctaaatgcaggtcagagtctagtgtggctcca
cctgaagatattagatctaatgaagggcctgacactgaagaggctagtcagagaaaacga
atgcggagttaa
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