Ricinus communis (castor bean): 8286024
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Entry
8286024 CDS
T01087
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03022
Basal transcription factors
rcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8286024
09124 Replication and repair
03420 Nucleotide excision repair
8286024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8286024
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8286024
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
8286024
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
8286024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
IBR
VWA
Motif
Other DBs
NCBI-GeneID:
8286024
NCBI-ProteinID:
XP_015579163
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Position
8:16625717..16628934
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AA seq
413 aa
AA seq
DB search
MSHSERRRMNGEGEEEDGDEDDIDGDGLDAWERTYTDERSWEALQEDESGLLRPIDNKAI
YHAQYRRRIRSLSTSARIQKGLIRFLYIVVDLSRAAGEMDIKPSRMVVIARHVEAFIREF
FDQNPLSQIGLVTIKDGVAHPLTELGGSPESHIKALTGKLECAGDSSLQNALDLVRGYLD
QIPAYGHREVLILYSALSTCDPGDIMETIQNCKKSKIRCSVIGLSAEMFICKHLCQETGG
LYSVAMDETHLKELLLEHAPPPPAIAEFAIANLIKMGFPQRSAEGSISICSCHKEAKVGE
GYICPRCKARVCDLPTECRICGLTLVSSPHLARSYHHLFPIAPFDEVSQRQSELQHRPQK
TCFGCQQSLLNPGNKPAFSVACPKCKQHFCLDCDIYIHESLHNCPGCESFRHS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgagccacagtgaaagaagaagaatgaatggagaaggtgaagaagaagacggtgatgag
gatgatatagatggcgatggacttgatgcttgggaaagaacttacactgatgaaagatct
tgggaagctttacaagaagatgaatctgggcttcttcgccctatcgataataaagctatt
tatcatgctcagtatcgccgtcgaattcgttccctttcaacttctgctcgtatccaaaag
ggcctcattcgctttctttacattgttgttgatctctctagggcagctggagagatggat
atcaaaccaagccgaatggttgtgattgcaagacatgtcgaggcttttataagggagttt
ttcgaccagaatccacttagtcagattggtttggtgactataaaagatggggttgcccat
cctttaacagagcttggtgggagtccagaatcccatattaaggctttgacgggcaagtta
gaatgcgcaggtgattcctcattacagaatgctcttgatcttgttcgtgggtatcttgat
caaatcccagcatatggtcatcgtgaagttctgattttgtattcggctctcagtacctgt
gatccaggagatataatggagactatccagaactgtaagaaatctaaaataaggtgctca
gtgatcggcctttctgcagaaatgtttatatgcaaacatctctgtcaagaaactggaggg
ttgtactctgttgcaatggatgagactcaccttaaagagttactgctggagcatgcacca
ccacctcctgcaatagcagaatttgcaattgctaacttgatcaagatgggcttcccacaa
aggtctgcggagggttctatctcaatttgttcttgtcataaagaagctaaagtcggtgag
ggatatatttgccccagatgcaaagcacgcgtatgcgacctccctactgaatgccgtatt
tgtgggttgacacttgtttcgtctccccatttggcgaggtcatatcatcatctctttccc
attgccccatttgatgaggtgtctcagcgccaaagtgaattgcagcacagacctcagaaa
acttgttttggctgccaacagagcctcctaaatcctggcaataaacctgccttttctgtt
gcttgccctaaatgcaagcagcacttctgtcttgactgcgacatttatattcatgagagc
ttgcataactgcccaggctgtgagagtttcaggcactcatag
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