Pseudoroseomonas cervicalis: PFY06_09800
Help
Entry
PFY06_09800 CDS
T08750
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rcv
Pseudoroseomonas cervicalis
Pathway
rcv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFY06_09800 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcv03400
]
PFY06_09800 (mfd)
Enzymes [BR:
rcv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFY06_09800 (mfd)
DNA repair and recombination proteins [BR:
rcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PFY06_09800 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_16
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WBV41542
LinkDB
All DBs
Position
complement(2064212..2067679)
Genome browser
AA seq
1155 aa
AA seq
DB search
MSQLTVHGAPEGFDALLLARRRAEAPGFVLHVCRDDARMARLQDGLAFFAPEVEVLRFPA
WDCLPYDRVSPHAELVAERVATLARLLEQEARPRIVLTTVNALVQRVPPRAVFEGATLHL
KKGGRIRPETLAGFLDANGYNRVATVMEPGEYAVRGGLFDLYPAGEPEPVRLDLFGDEIE
TLRRFGTETQRSGEAVAELWLRPVGEVLLDEDSIARFRAGYRDLFGMPAAEDPLYVSVSA
GRRHPGMEHYAPLFHESMATLLDYMPGASVSLDHQAEDALTTRLEMVEDHYEARRTPPRE
GEVPYRPIPPRRLYLNRRDWDAMLAGAPLLAFSPFPKPEGAEGLDAGGRPGRLYVEARAA
GQNAFAVYREQAEAQAKAGQRPVVAAWTRGSRERLGNLLRENRIPAQAVEDWAAARKLPA
GTVALAIYGVERGFTGPAAPGTRDTAAIALTSEQDLLGERIARPPRRRKRADQFIADATE
IAEGDLVVHQDHGIGRYDGLETLDVSGAPHDCLRLLYDGGDKLFLPVENIELLSRFGSDS
AGVALDKLGGTSWQNRKAKAKQRIADMAGQLIRIAAERRVKDAPLVTPPEGAWDEFCARF
PFAETEDQQRAIADVLEDLAAGRPMDRLICGDVGFGKTEIALRAAFVVAMSGAQVAVVVP
TTLLSRQHFRTFSARFEGLPIKVAQLSRMVTAKEAAQVKAGLADGSINIVVGTHALLAKG
VEFADLGLVIVDEEQHFGVAHKERLKSLKADVHVLTLTATPIPRTLQLALTGVREMSVIA
TPPVDRLAVRTFIMPFDAVVIREALQRERFRGGQVFCVVPRLEDLPKMVTRLADIVPEAR
VVQAHGRLTPTELERVMTEFGDGKFDILLATNIVESGLDMPAVNTLIIYRADMFGLAQLY
QLRGRVGRGKQRGYAYLTWPATQRLSPAAEKRLAVMQTLDNLGAGFTLASHDLDIRGAGN
LLGDEQSGHIREVGIELYQQMLEEAVADIKAGQGRRGEGADRDWTPQINLGLPVLIPENY
VADLPVRLGLYRRIGALAGDAEVEAMAAELGDRFGALPPEVENLLQVVSIKHLCRQAGVE
KLDAGPKGIVAAFRRNNFVNPGGLVNWVAAQKGLVKLRPDHKLAMVREMDLKTRVRAAKD
MLAALAKVARQAKAA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagccaactcaccgtccatggcgcgccggaaggcttcgacgcgctgctgctcgcccgc
cgccgggccgaggccccgggcttcgtgctgcatgtctgccgcgacgatgcccgcatggcg
cggctgcaggacgggctggccttcttcgcccccgaggtcgaggtgctgcgcttcccggcc
tgggactgcctgccctatgaccgcgtctcgccgcatgccgagctggtggccgagcgcgtc
gccaccctggcgcgcctgctggagcaggaggcccgcccgcgcattgtgctgaccacggtg
aacgcgctggtgcagcgcgtgccgccgcgcgcggtgttcgagggcgccacgctgcatctg
aagaagggcggccgcatccgccccgagacgctggccggcttcctggatgccaatggctac
aaccgcgtcgccacggtgatggagccgggcgaatacgcggtgcgcggcgggctgttcgac
ctttacccggccggcgagccggagccggtgcgcctcgacctgttcggcgacgagatcgag
acgctgcgccgcttcggcaccgagacccagcgcagcggcgaggcggtggccgagctctgg
ctgcgcccggtgggcgaggtgctgctggatgaggattccatcgcccgcttccgcgccggc
tatcgcgatctgttcggcatgccggcggccgaggacccgctctatgtctcggtctccgcc
gggcggcggcatccgggcatggagcattacgcgccgctcttccatgagagcatggcgaca
ctgctggactacatgccgggcgcctcggtcagcctggaccaccaggccgaggatgctctg
accacccggctggagatggtcgaggaccattacgaggcgcgccgcaccccgccgcgcgag
ggcgaggtgccctatcgccccatcccgccgcgccgcctctatctgaaccggcgcgactgg
gacgcgatgctggcgggcgccccgctgctggccttcagccccttcccgaagcccgagggc
gccgaggggctggatgccggcggccgcccgggccggctctatgtcgaggcccgcgccgcc
gggcagaacgccttcgccgtctatcgcgaacaagccgaggcgcaggccaaggcggggcag
cgcccggtggtcgccgcctggactcgcggctcgcgcgagcggctgggcaacctgctgcgg
gagaaccgcatccccgcccaggcggtggaagactgggccgccgcgcgcaagctgcccgcc
ggcacggtcgcgctggccatctatggcgtggagcgcggcttcaccggccccgccgcgccc
ggcacgcgcgacacggccgccatcgcgctcaccagcgagcaggatctgctgggcgagcgc
atcgcccgcccgccgcgccggcgcaagcgggccgaccagttcatcgccgacgccaccgag
atcgccgagggcgatctggtggtgcatcaggaccacggcatcggccgctatgacgggctg
gagacgctcgacgtctccggcgcgccgcatgactgcctgcggctgctctacgacggcggc
gacaagctgttcctgccggtcgagaatatcgagctgctgtcgcgcttcggcagcgacagc
gccggcgtggcgctggacaagctcggcggcacgtcgtggcagaaccgcaaggccaaggcc
aagcagcgcatcgccgacatggcgggccagctgatccgcatcgccgccgagcggcgggtg
aaggacgcgccgctggtcaccccgcccgagggcgcctgggacgagttctgcgcccgcttc
cccttcgccgagaccgaggaccagcagcgcgccatcgccgatgtgctggaggatctggcc
gccggccggccgatggaccggctgatctgcggcgatgtcggcttcggcaagaccgagatc
gcgctgcgcgccgccttcgttgtcgccatgtcgggcgcgcaggtggcggtggtggtgccg
accacgctgctctcccgccagcactttcgcacgttttcggcgcgcttcgaggggctgccg
atcaaggtggcccagctctcccgcatggtcaccgccaaggaggcagcgcaggtcaaggcg
gggctcgccgatggctcgatcaacatcgtcgtcggcacccatgcgctgctggccaagggg
gtggaattcgccgatctcggcctggtcatcgtcgatgaggagcagcatttcggcgtcgcc
cacaaggagcggctgaaatcgctgaaggccgatgtgcatgtgctgacgctgaccgcgacg
ccgatcccgcgcaccctgcaactggcgctgaccggtgtgcgcgagatgagcgtgatcgcg
acgccgcccgtcgaccggctggcggtgcgcaccttcatcatgcccttcgacgccgtggtc
atccgcgaggcgctgcagcgcgagcgcttccgcggcggccaggtcttctgcgtggtgccg
cggctggaggacctgccgaagatggtcacccggctggccgacatcgtgccggaggcgcgc
gtcgtccaggcgcatggccgcctgacgccgaccgagctcgagcgcgtcatgaccgagttc
ggcgacggcaagttcgacatcctgctggcgaccaatatcgtcgagagcgggctcgacatg
ccggcggtgaacacgctgatcatctaccgcgccgacatgttcggcctggcccagctctac
cagctgcgcgggcgggtggggcgcggcaagcagcgcggctatgcctatctgacctggccc
gcgacgcagcgcctgtcgccggcggccgagaagcggctggcggtgatgcagacgctggac
aatcttggcgccggcttcaccctggccagccacgacctcgacatccgcggcgccggcaat
ctgctgggcgatgagcagtcgggccatatccgcgaggtcggcatcgagctctaccagcag
atgctggaagaggcggtggccgacatcaaggccgggcagggcaggcggggcgagggcgcc
gaccgcgactggacgccgcagatcaatctcggcctgccggtgctgatcccggagaattat
gtcgccgacctgccggtgcggctcggcctgtatcgccgcatcggcgcgctggccggcgat
gccgaggtggaggcgatggccgccgagctgggcgaccgcttcggcgccctgccgcccgag
gtcgagaatctgctgcaggtggtctccatcaagcatctctgccgccaggcgggggtggag
aaactggatgccgggccgaagggcatcgtcgccgccttccgccgcaacaatttcgtcaat
ccgggcgggctggtgaactgggtggcggcgcagaaggggctggtgaagctgcgccccgac
cacaagctggccatggtgcgggagatggacctgaagacccgggtgcgcgccgccaaggac
atgctggcggcgctggccaaggtggcgcggcaggccaaagcggcctga
DBGET
integrated database retrieval system
