Pseudoroseomonas cervicalis: PFY06_11895
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Entry
PFY06_11895 CDS
T08750
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rcv
Pseudoroseomonas cervicalis
Brite
KEGG Orthology (KO) [BR:
rcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PFY06_11895 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcv03400
]
PFY06_11895 (ligD)
Enzymes [BR:
rcv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PFY06_11895 (ligD)
DNA repair and recombination proteins [BR:
rcv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PFY06_11895 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DUF3432
Motif
Other DBs
NCBI-ProteinID:
WBV41939
LinkDB
All DBs
Position
2510138..2512978
Genome browser
AA seq
946 aa
AA seq
DB search
MAASPSPAPNLERYRQKRHFERTPEPGPAAGRAARRNPVFVVQKHDARRLHWDFRLEHGG
VLWSWAVPKGPSLDPADKRLAVRTEDHPLAYADFAGTIPQGQYGAGTVERWDHGQWEGPA
DPAAALARGELKFTLKGCRLQGRFVLVRMAPRGRDRGENWLLIKERDDFVRPGADAAWME
AEIDAPPAPRRAASRRGAVSGRAARAEDEAAPAPGKLRAARKAPSRASGQPSPRASGQPS
PRASGQPSPRASGQPSPRASGATPARVAAKATALRPALPRTGRAEPGLDTPPAPDARRAG
LPKEARPQLASLASELPEEPGWLSEVKFDGYRLLVRLQRGKARLITRGAQDWTHRLPELA
RAAEALGLRDALLDGELVALRRDGLSSFGDLQKALSEGRTAGLRLYLFDLLHWEGWDLRR
APLIARKAALQRLVRFDDRLRYSDHVEGQAEAMRARACAMGLEGIISKRADAPYTAGRGT
AWRKLKCGGREELVILGWTPPAGSRQHFGALHLGYYDLDGTLHYAGGVGTGFDADTLRDL
RHRLDRLAAGRPALRHAGDPPERAIRWVAPELVAEIRFTGWTAAGRIRQAVFLGLREDKR
AGQVRRAVVEAEGKEHRLPATRGGARAAPADPPEPPPAKPARARPAHAPTQGKGDPAAPR
LTHPERELWPGITKQDLADYWRAVAEQALPGIAHRPLALLRCPEGIEGESFFQKHAMRGN
PPALRAGESQGDPYLAVDGLDGLLACAQLSAIELHAWGAPESDPDQPDRLVLDLDPGEGV
AFDDVVQAARDIRDALRGIGLESFCRTSGGKGLHLVAPLAPGADWDSLRDFARGIAETLS
AAAPRRFVATVSKARRRGRILIDWLRNGRGATAVASFSPRARPGAPVATPLAWREVKRGL
DPLAFTLQTIPKRLARQRRDPWEGWEALNQRLPAPPDAAPKTKRSR
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttcgccctcccccgcgccgaacctggagcgctaccggcagaagcggcatttc
gagcgcacgccggagcccggccccgccgcgggccgtgccgcccgccgcaaccccgtcttc
gtggtgcagaagcacgatgcgcgccgcctgcactgggatttccgcctggagcatggcggc
gtgctgtggagctgggcggtgccgaagggaccctcgctcgaccccgccgacaagcgcctg
gcggtgcgcaccgaggaccatcccctcgcctatgccgatttcgccggtaccatcccgcag
ggccagtatggcgcgggcacggtggagcgatgggaccacggccagtgggaaggccctgcc
gaccctgccgccgccctggccaggggcgagctgaaattcaccctgaaaggctgccggctg
cagggccgtttcgtgctggttcgcatggcaccgcgcggccgcgacaggggcgagaactgg
ctgctcatcaaggaacgcgacgatttcgtccgccccggcgccgatgcggcgtggatggag
gcggagatcgacgcgccgcccgccccgcggcgcgccgcgagccggcggggcgccgtgtca
gggcgggcggcccgtgccgaggacgaagctgcccctgcccctggcaagctgcgcgcggcc
cgcaaggcgccgtcgcgcgcctccggccagccctccccgcgcgcctccggccagccctcc
ccgcgcgcctccggccagccctccccgcgcgcctccggccagccctccccgcgcgcctct
ggcgcgacacccgcccgtgtcgccgccaaggccaccgccctacgccctgccctgccccgc
accggccgggccgagcccggcctcgacacgccgcccgccccggacgcccgccgcgccggc
ctgccaaaggaggcccgcccacagctggcgagcctggcgagcgagctgcccgaggagccc
ggctggctcagcgaggtgaagttcgacggctaccgcctgctggtgcggctgcagcgcggc
aaggcgcggctgatcacccgcggcgcgcaggactggacgcatcgcctgcccgagctcgcc
cgcgccgccgaggcgctggggctccgcgacgcgctgctggatggcgagctggtggcgctg
cggcgcgatgggctgtcctccttcggtgatctgcagaaggccctgtccgagggacgcacc
gccgggctgcgcctctatctgttcgacctgctgcactgggaaggctgggatctgcgccgc
gccccgctcatcgcgcgcaaggccgcgctgcagcgcctggtccgcttcgacgaccggctg
cgctacagcgaccatgtcgagggccaggccgaggcgatgcgtgcccgcgcctgcgccatg
gggctggaaggcatcatcagcaagcgcgccgacgcgccctacaccgccggccgcggcacc
gcctggcgcaagctgaaatgcggcgggcgggaggagctggtgatccttggctggacaccg
cccgccggcagccgccagcatttcggcgcgctgcatctgggctattacgacctcgacggc
acgctgcactatgccggcggtgtcggcaccggcttcgacgccgacacgctgcgcgatctg
cgccaccgcctggaccggctcgccgccggccgtccggcgctgcgccatgccggcgacccg
ccggagcgcgcgatccgctgggtggcgccggagctggtggccgagatccgcttcaccggc
tggacggcggctggccggatccggcaggcggtgttcctcgggctgcgggaggacaagcgc
gccggccaggtgcgccgcgccgtggtcgaggccgagggcaaggagcaccggctgccggcc
acacgcggcggcgcccgcgccgcgccggccgacccgccggaaccgccgcccgcgaaaccc
gcccgcgccaggccggcgcacgcgcccacgcaaggcaagggcgaccccgccgcgccgcgg
ctgacgcatcccgagcgcgagctctggcccggcatcaccaagcaggatctggccgattac
tggcgcgccgtggcggagcaggccctgcccggcatcgcccaccggccgctggccctgctg
cgctgccccgagggcatcgagggcgagagcttcttccagaagcacgccatgcgcggcaac
ccgcccgccctgcgcgccggggagagtcagggcgacccctatctggcggtggacggtctc
gacgggctgctggcctgcgcccagctctcggcgatcgagctgcatgcctggggcgccccg
gaatccgatcccgaccagccggaccggctggtgctggacctcgaccccggagagggcgtg
gccttcgacgatgtggtgcaggcggcgcgcgacatccgcgacgcgctgcggggcatcggg
ctggagagcttctgccgcaccagcggcggcaaggggctgcatctggtggccccgctggcg
ccgggggcggattgggattcgctgcgggatttcgcgcgcggcatcgccgagacgctgtcg
gccgccgcgccgcgccgcttcgtcgccaccgtgtccaaggccaggcggcgtggccgcatc
ctgatcgactggctgcgcaacgggcgcggcgccacggcggtggccagcttctcgccgcgc
gcgcggccgggggcgccggtggcgacgccgctggcctggcgcgaggtgaagcgcggcctc
gacccgctggccttcacgctgcagaccatcccgaagcgcctggcgcggcagcgccgcgac
ccgtgggagggctgggaggcgctgaaccagcgcctgcccgccccgcccgatgccgccccc
aaaaccaagcggagccgatga
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