Roseobacter denitrificans: RD1_2926
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Entry
RD1_2926 CDS
T00376
Symbol
pdhB
Name
(GenBank) pyruvate dehydrogenase E1 component, beta subunit, putative
KO
K11381
2-oxoisovalerate dehydrogenase E1 component [EC:
1.2.4.4
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00280
Valine, leucine and isoleucine degradation
rde00640
Propanoate metabolism
rde00785
Lipoic acid metabolism
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01210
2-Oxocarboxylic acid metabolism
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
RD1_2926 (pdhB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
RD1_2926 (pdhB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RD1_2926 (pdhB)
Enzymes [BR:
rde01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.4 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
RD1_2926 (pdhB)
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Gene cluster
GFIT
Motif
Pfam:
E1_dh
Transket_pyr
Transketolase_C
PFOR_II
Motif
Other DBs
NCBI-ProteinID:
ABG32448
RoseoBase:
RD1_2926
UniProt:
Q164Z5
LinkDB
All DBs
Position
complement(2801326..2803515)
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AA seq
729 aa
AA seq
DB search
MDRAGIVHETFLKRVAAHDFPQGPAARRDVSPEKMVEIFRAQCLSRQLDRTSRAMQKAGQ
GYYTIGSSGHEGMAAVAESLRPTDMAFLHYRDAAFQIQRAAQVPGQTPAWDILLSFAASR
DDPISGGRHKVLGSKTLNIPPQTSTIASHLPKAMGVAYSIGLARRLKPDHSTLPYDAVVM
CSFGDASANHSTAQGAINAACWSSYQSVPMPLLLVCEDNGIGISTPTPEGWIAANFAHRP
GLRYFACNGLDMTETLAVAGAAAAYVRRHRKPAFLHLRTVRLYGHAGSDVEATYRSPQAI
AADEANDPLLHSVRLMHERAACAPQDALAIYNEADAACTRIAAQAVTRPRLKTREDVAAS
LIPPARQVVPSNGPDASERQTLFGSDMRAMTEPQPMGRLISWALADLMHAHKEIIVAGED
VGRKGGVYGATQKLQARFGPDRVIDTLLDEQSILGLALGLAHNGFIPIPEIQFLAYLHNA
EDQLRGEAATLSFFSNGQFTNPMVLRIAGLGYQKGFGGHFHNDNSLAVLRDIPGLVIACP
SNGADAAMMLREAVRLAREEQRVVVFIEPIALYPMRDLHVAGDGGWLHHYPAPDQRIALG
DVGVAGDGTDIALVSYGNGRYLSEQAAAILVDQGIAARVVDIRWLAPQPDAAILAATQDC
ASVLIVDECRRTGSQSEALLSLFAESGRTRVARLTAEDCFIATGPAYAATLPSVEGIVSA
ALELAQGAS
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtgctgggatcgttcacgagacctttctgaaacgcgtcgcagcgcatgatttc
ccgcaaggacccgccgcgcggcgcgatgtgtcaccggaaaagatggtcgagattttccgc
gcgcaatgcctgtcgcgccagctcgacaggaccagccgcgcgatgcaaaaggccgggcag
gggtattacaccatcggctccagcgggcacgagggcatggcggcggttgctgaaagcctg
cgccccacggacatggcttttctgcactaccgtgacgccgcttttcagatccagcgcgcg
gcacaggtgccggggcagacacccgcatgggacatcctgctgagctttgccgcatcgcgc
gatgatccgatctctggcgggcggcacaaggtcttgggctccaagacgctcaacatcccg
ccgcagacctcgacgattgcaagccacctgcccaaggcgatgggggtcgcctattcgatt
ggtctggcgcgtcgtctgaaacctgaccattccacgctgccctatgatgcggtggtcatg
tgttcatttggcgatgcatcggccaatcattccacggcgcagggcgcaatcaacgccgcc
tgctggagcagttatcaatccgtacccatgccgctgctgctggtctgcgaagacaatggc
atcggcatttccaccccaacacccgaggggtggatcgcggccaattttgcgcaccgtccg
ggcctgcgctatttcgcctgcaatggtctggatatgaccgagaccctcgctgttgcgggg
gctgcggcggcatatgtgcggcgccaccgcaagcctgcgtttctgcatctgcgcaccgtg
cgtctttatgggcacgccgggtcagatgtggaggcgacctatcgcagcccgcaggcgatt
gcggcggatgaagccaatgaccccctgttgcacagcgtccgcctgatgcacgagcgcgcg
gcctgcgcaccgcaagacgcgctcgccatctataatgaggcagacgccgcctgcacacgt
atcgcggcgcaagcggtgacgcggccgcgcctgaaaacccgcgaagacgtcgccgccagc
ctgatcccgcccgcgcggcaggtcgtgccaagcaacgggccggatgccagcgaacgccag
acattgtttggcagcgacatgcgcgccatgacagagccgcagcccatggggcggctgatc
agctgggcgcttgcggatctgatgcatgcacataaggaaatcatcgtcgcgggagaggac
gtcgggcgcaagggcggcgtttacggtgcgacgcaaaagctgcaagcgcgatttggcccg
gatcgggtcattgatacgctgctggacgaacagtccattctgggcctcgcattggggctg
gcgcataacggtttcatcccgatcccggaaatccagttccttgcctatctgcacaatgca
gaggatcaactgcgcggtgaggcagcgacgctcagcttcttttcaaatgggcagtttacc
aacccgatggtgctgcggatcgcggggcttgggtatcaaaaaggctttggagggcatttc
cacaacgacaacagccttgccgttctgcgcgacattccggggcttgtgatcgcatgtccg
tccaatggggcggatgccgcgatgatgctgcgcgaggcggtgcggctggcgcgcgaagaa
cagcgcgtggtggtctttatcgagccgatcgcactttacccgatgcgcgacctgcacgtg
gcgggtgacggcggatggctgcaccactacccggcaccggatcagcggatcgcccttggc
gatgtgggcgtggcgggggatggcacggatatcgcgctggtttcctatggcaacgggcgg
tatctgtctgaacaggcagccgcaatattggtagatcaaggcattgcggcccgggtcgtg
gacatccgctggctggccccgcagcccgatgcggcgatccttgcggccacgcaggattgt
gcgtcggtgcttatcgttgatgagtgccgccgcacgggcagtcagtccgaggccttgctg
agcctctttgccgaatcggggcggacccgggtggcgcggctcacagcagaggattgtttt
atcgcaaccgggcctgcctatgcggcgacgctgccttcggtcgaggggatcgtgtctgcg
gcactcgaactggcgcagggtgcatcatga
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